Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L05
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    36   0.009
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   4.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   5.7  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 833 VRHLXGPIAAFRKAVAVPALPRTRSGKALRGAIAKLARSQSVKIP--STIEDPSV 675
           VR   GP A+ RK +    LP+TRSGK +R  + K+   +  +I   ST+ DP V
Sbjct: 593 VRSTIGPFASPRKLI-FSDLPKTRSGKIMRRILRKILAGEVDQIGDLSTLADPKV 646


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 55  HPHQSFXSLKSHLXPHFXKSLTSPXKSQIFIWALCP 162
           HP+ +F SLK+++  H  K L S  K    +WA  P
Sbjct: 10  HPN-TFASLKTNVSYHGVKCLASQSKRGFKVWADVP 44


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -2

Query: 834 GPSSXWADRSFPQSCGSSRPTEDQIREGAKRCHCQIGQVSVSENTFHYRRSIGL 673
           GP+  WA R  P++   S  +   +    +  H   G   V  ++   R S+ L
Sbjct: 114 GPNGEWAKRRKPRTTVESNASSSHLVSKPESSHPSTGSFEVKSSSSKSRSSMSL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,300
Number of Sequences: 5004
Number of extensions: 62439
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)