Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L05
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397...    39   0.004
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877...    36   0.030
07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283     29   6.0  
09_03_0147 + 12763526-12763815,12763938-12764067,12764185-127644...    28   8.0  

>02_04_0049 +
           19238794-19239003,19239359-19239505,19239595-19239750,
           19239870-19239992,19240073-19240241,19240700-19240782,
           19240917-19241018,19241104-19241192,19241317-19241407,
           19241734-19241847,19242371-19242447,19242534-19242612,
           19242710-19242778,19243022-19243197,19243309-19243365,
           19243460-19243550,19243644-19243742,19243878-19244063
          Length = 705

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 833 VRHLXGPIAAFRKAVAVPALPRTRSGKALRGAIAKLARSQSVKI--PSTIEDPSV 675
           VR+  G  AA  K    P LP+TRSGK +R  + K+A  Q  ++   ST+ DP V
Sbjct: 641 VRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASKQLDELGDTSTLADPGV 695


>04_03_0824 +
           20086639-20087263,20087282-20087463,20087569-20087724,
           20087867-20087989,20088079-20088247,20088384-20088466,
           20088641-20088742,20089246-20089359,20089735-20089811,
           20089884-20089962,20090060-20090128,20090235-20090410,
           20090460-20090561,20090678-20090768,20090878-20090976,
           20091141-20091326
          Length = 810

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 833 VRHLXGPIAAFRKAVAVPALPRTRSGKALRGAIAKLARSQSVKI--PSTIEDPSV 675
           VR   G  AA  K    P LP+TRSGK +R  + K+A  Q  ++   ST+ +P V
Sbjct: 746 VRSQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLAEPGV 800


>07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283
          Length = 249

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 833 VRHLXGPIAAFRKAVAVPALPRTRSGKALRGAIAKL 726
           V++   P    RK V V ++PR+ SGK LR  +  L
Sbjct: 203 VQNKVAPYKKIRKVVFVDSIPRSPSGKILRRQLKNL 238


>09_03_0147 +
           12763526-12763815,12763938-12764067,12764185-12764435,
           12764546-12764750,12764878-12764918,12765006-12765131,
           12765429-12765502,12765671-12765891,12766251-12766345,
           12766463-12766679,12766781-12766906,12766988-12767086,
           12767171-12767380,12767496-12767606
          Length = 731

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 815 PIAAFRKAVAVPALPRTRSGKALRGAIAK 729
           P+      V VP+LPRT S K +R  + K
Sbjct: 692 PLFKVSSVVVVPSLPRTASNKVMRRVLRK 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,418,996
Number of Sequences: 37544
Number of extensions: 371997
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)