Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L05
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   2.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   6.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   8.0  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 427 ISFNIYISLILTCIIC 474
           + ++I +SL++TC+IC
Sbjct: 1   MKYSILLSLLITCLIC 16


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 698 KVFSLTETWPIWQWHLLAPSLIWSSV 775
           KVF      P+W W+   P++ +  V
Sbjct: 648 KVFGFPLDRPMWAWNFTIPNMYFKDV 673


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 698 KVFSLTETWPIWQWHLLAPSLIWSSV 775
           KVF      P+W W+   P++ +  V
Sbjct: 648 KVFGFPLDRPMWAWNFTIPNMYFKDV 673


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 495 WICECSRMCCSPSHQKSIVLTLSYSEIPSIRFILR 599
           W+C  S M C P +   I  T S +     R ++R
Sbjct: 533 WLCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIR 567


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 495 WICECSRMCCSPSHQKSIVLTLSYSEIPSIRFILR 599
           W+C  S M C P +   I  T S +     R ++R
Sbjct: 586 WLCGLSSMLCIPGYMIYIWFTTSGTISEKFRKLIR 620


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 534  GLDCNTCVSIHRSTNSRSVSANNTG*NKRNI 442
            G + NTC  I R T  RS+ +++T   +R++
Sbjct: 1658 GSNYNTCDRIKRGTVIRSIRSHSTWDPRRHM 1688


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 356 SDLVHPHYLTF 324
           SDLVHPH+  F
Sbjct: 39  SDLVHPHWRAF 49


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 513 VSIHRSTNSRSVSANNTG*NKRNIDIK 433
           V +H    + ++  +N G N +NI +K
Sbjct: 292 VEMHHEALTEALPGDNVGFNVKNISVK 318


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +3

Query: 120 ITXQIANLYLGFM---PQFYCCYYKKWVL 197
           I   I+N  + F    P    CYY+ WVL
Sbjct: 92  INLAISNFLMMFCMSPPMVINCYYETWVL 120


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 513 VSIHRSTNSRSVSANNTG*NKRNIDIK 433
           V +H    + ++  +N G N +NI +K
Sbjct: 3   VEMHHEALTEALPGDNVGFNVKNISVK 29


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 159 PQFYCCYYKKWVL 197
           P    CYY+ WVL
Sbjct: 74  PMVINCYYETWVL 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,327
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)