Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L02
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.64 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   3.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.9  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    26   5.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.9  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    26   7.8  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -3

Query: 642 VINSHYKKQHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPFTGNHTHLNMPGS 463
           V +SHY   H M    +  + D    K D +  V+LS S++S V    T   TH +M   
Sbjct: 147 VDSSHYPIFHQMEGALVWNRNDTAKMKNDLK-KVALSPSLKSMVDDETTALETHNDMQDI 205

Query: 462 QWGQGHKYLSDHL 424
              +  K++S HL
Sbjct: 206 YSLEETKFVSQHL 218


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 485 VWFPVKGLGTL-LCMDEDRLTAPRQSYLLTYGSTCIVISI 601
           ++F +  +GTL + ++  +LT  + S L+ YG+ C++I +
Sbjct: 228 IFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILV 267


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 282 GSTVIVFHVTISLISLGSCYLLVSSG 205
           G+  + F V+IS+ SLGSC  LV  G
Sbjct: 124 GNVSMDFGVSISVSSLGSCVFLVGFG 149


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = -3

Query: 360 GVRNMSTNVKPPVSAKEKLKKAVKEYGSTVI-VFHVTISLISLGS--CYLLVSSGVDLVA 190
           G    STN++  +  + K+   +  +   V+  F +TI  I LG   C+  +++ +  + 
Sbjct: 267 GYTRYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQSIHLGLWFCFFFLTACISALY 326

Query: 189 ILKYLNIEEGTVLKAAGSNAGTFVIAYTVHKIFAPFRIAI 70
           IL    +   + L+A           YT+H I+  FRI +
Sbjct: 327 ILFGAFVALPSTLRALVEQR-----YYTLHSIYKIFRIMV 361


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 44  TMKGVAVKVMAIRNGAKILCTV*AITKVPA 133
           T    A + +AI+NGA+I C+   +TKV A
Sbjct: 171 TASTAAKRRIAIKNGAEIACSYEDLTKVVA 200


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 351 NMSTNVKPPVSAKEKLKKAVKEYGSTVI--VFHVTISLISLGS-CYLLV 214
           N   +V+PP+S+ +     V+ YG T +   +   ++  +LGS CY  +
Sbjct: 150 NSKLSVRPPLSSFQSASDIVRRYGFTALWNGYRYHLTRDALGSACYFTI 198


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 444 KYLSDHLHSAHYLSLRNEYREKIINKIVGVRNMSTNVKPPVSAKEKLKKAVKE 286
           KY+ + L      SL  +  E+ I+    + + S N+    +AKEKLKK++ E
Sbjct: 94  KYIENKLKKEEVASLIAKLAEERID--TSLLSSSKNLGKQATAKEKLKKSLLE 144


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 298 LFEFLFSTYRGLHIRTHVSY 357
           LF  LFST+  LH R+H  Y
Sbjct: 100 LFCLLFSTFLSLHGRSHFGY 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,305
Number of Sequences: 5004
Number of extensions: 83551
Number of successful extensions: 253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)