Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L02
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706     70   3e-12
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    34   0.13 
01_06_0006 - 25517892-25517935,25518156-25518276,25518598-255187...    31   1.5  
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005...    29   3.6  
01_06_1313 - 36212524-36213669                                         29   4.7  
02_04_0331 - 22087692-22087946,22088060-22088179,22088338-220884...    29   6.2  

>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
          Length = 187

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 39/105 (37%), Positives = 56/105 (53%)
 Frame = -3

Query: 321 SAKEKLKKAVKEYGSTVIVFHVTISLISLGSCYLLVSSGVDLVAILKYLNIEEGTVLKAA 142
           S  E+ K+ + +YG   +   +T+SLIS   CYLLVS+GVD+  +L  + I  G      
Sbjct: 88  SRTEQAKELLAKYGGAYLATSITLSLISFTLCYLLVSAGVDVQDLLGKVGIATG----ET 143

Query: 141 GSNAGTFVIAYTVHKIFAPFRIAITLTATPFIVRHLRNIGILKRG 7
           G   GTF +AY  HK  +P R   T+  TP +      IG +K+G
Sbjct: 144 GGKVGTFALAYAAHKAASPIRFPPTVALTPVVASW---IGRIKKG 185


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +1

Query: 553 TIIFVNIWVNLYCYINFRHVMLFFIVRINNRTGNISFSVRR-KS--PYFGCVNINNI 714
           T++ +++ + LYCY   +++M+F +  I     N+  SV++ KS    FGC+  +N+
Sbjct: 725 TLVMISVQLYLYCYRKLKYIMIFQVSGIRFMWENVIQSVKKVKSGDKGFGCILAHNM 781


>01_06_0006 -
           25517892-25517935,25518156-25518276,25518598-25518733,
           25519189-25519280,25519358-25519426,25519710-25519821,
           25519897-25520015,25520302-25520355,25520811-25520891,
           25520968-25521051,25521124-25521315,25521633-25521746,
           25521832-25521978,25522066-25522302,25522762-25522810,
           25522894-25523027,25523124-25523324,25523532-25523701,
           25523773-25523875,25524198-25524361,25525015-25525055,
           25525144-25525187
          Length = 835

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -3

Query: 243 ISLGSCYLLVSSGVDLVAILKYLNIEEGTVLKAAGSNAGTFVIAYTVHKIFAPFRIAITL 64
           +S GS ++L SS + ++ IL   N       K + + +G FVIA T H I  PF +   +
Sbjct: 143 LSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRSGAFVIAATGHHIKHPFLLPSEI 202

Query: 63  TATPF 49
            ++ F
Sbjct: 203 FSSLF 207


>03_06_0065 -
           31399791-31399874,31399956-31400165,31400407-31400526,
           31401166-31401225,31401670-31401879,31402512-31402587,
           31403010-31403173,31403254-31403316,31403640-31403727,
           31403810-31404460,31405102-31405149,31405334-31405902
          Length = 780

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 777 KQNVHVSPLLKSQSVALKLPTNVVDINASEVGRFSPNRERDISG 646
           K++V  SP   S S +   P +    + S VG   P+R RD+ G
Sbjct: 5   KRSVSPSPSPSSSSASASTPASPARASTSRVGGGVPSRRRDVVG 48


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 363 VGVRNMSTNVKPPVSAKEKLKKAVKEYGSTVIVFHVTISLISLGSCYLLVS-SGVDLVAI 187
           +G    +  + PP  + E+ K + + + S V+ F    S++   +  LLV     DL  +
Sbjct: 224 IGKEKTAMRMAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKVPPRDLSLL 283

Query: 186 LKYLNIEEGTVL 151
           +  L++ EGT +
Sbjct: 284 VINLSVLEGTAI 295


>02_04_0331 -
           22087692-22087946,22088060-22088179,22088338-22088439,
           22088523-22088582,22088657-22088709,22088790-22088875,
           22089060-22089104,22089484-22089565,22089670-22089784
          Length = 305

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 196 SGYSEIFKHRRGNCLEGCWF 137
           +GY+ IF HRRG+C   C F
Sbjct: 71  AGYAVIFLHRRGSCQPYCRF 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,357,832
Number of Sequences: 37544
Number of extensions: 475394
Number of successful extensions: 1191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)