Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L02
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    25   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 611 TCL-KLI*QYKLTHMLTNMIVEGLLAYLRPCRATFQVLSQETILISTCQAHNGDKATNTY 435
           TC+ KL+  +K  +   +MIV+ L   + P      V+ +E + +   + + GD    TY
Sbjct: 70  TCIMKLLRTFKNGNFDFDMIVKQLEITMPPEEV---VIGKEIVAVCRNEEYTGDDCQKTY 126

Query: 434 QII 426
           Q +
Sbjct: 127 QYV 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/63 (23%), Positives = 23/63 (36%)
 Frame = -2

Query: 553 SRGC*PIFVHAEQRSKSFHRKPYSSQHARLTMGTRPQILIRSSSQCTLFESKK*IQRKNY 374
           S  C P   H  + +  F   PY +   R+  G+     + S  +  +F  KK      Y
Sbjct: 156 SVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGS----WVHSGEEVNIFLDKKGFHMDGY 211

Query: 373 K*N 365
             N
Sbjct: 212 TNN 214


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 WHVEMSMVSCERTWNVALH 525
           W VE + VS ER  +VALH
Sbjct: 712 WIVEPTDVSVERNKHVALH 730


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 WHVEMSMVSCERTWNVALH 525
           W VE + VS ER  +VALH
Sbjct: 708 WIVEPTDVSVERNKHVALH 726


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 312 EKLKKAVKEYGSTVIVFHVTI 250
           +K++   K+  +TV+ FHVT+
Sbjct: 49  DKMRPPKKDGQATVVYFHVTV 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,181
Number of Sequences: 438
Number of extensions: 6133
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)