Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K24
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    28   5.2  
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597...    27   9.1  

>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
            5704654-5704873,5705303-5707207
          Length = 1174

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 240  IQKILYNN*YLICI*-CKLCVFIFLAIE*HSVRKFKDLLLYINKIYNLHYLKXLCTI 407
            +Q++L+++  L+C+  C+ CV  F+A E  S+R   +   +++ I N       CT+
Sbjct: 880  LQQLLFDHGKLVCVRQCEGCVLAFIAFEDSSIRSRAE--RFLSSITNSIETVLRCTV 934


>02_05_0399 +
           28658667-28658922,28659287-28659443,28659527-28659746,
           28660549-28660602,28660671-28660750,28661269-28661351,
           28661385-28661546,28661667-28662071,28662151-28662503,
           28662590-28662835,28663158-28663481,28664110-28664154
          Length = 794

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 327 SVRKFKDLLLYINKIYNLHYLKXLCTISYPRAISV 431
           S+ +F+D L+Y+NKI  +     +C I  P   SV
Sbjct: 64  SIEEFEDPLVYLNKIAPIAAKYGICKIVSPLCASV 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,862
Number of Sequences: 37544
Number of extensions: 170217
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)