Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K24
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.45 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.60 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   SNYLHELGHXYHQTNI*NKNNYYSLIIHKNHLV 100
           +NY +   + Y+  N  N NNY   + +KN+++
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 11  LHELGHXYHQTNI*NKNNYYSLIIHKNHLV 100
           +  L + Y  +N  N NNY   + +KN+++
Sbjct: 82  ISSLSNNYKYSNYNNYNNYNKKLYYKNYII 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 2   SNYLHELGHXYHQTNI*NKNNYYSLIIHKNHLV 100
           +NY +   + Y+  N    NNY   + +KN+++
Sbjct: 94  NNYKYNYNNKYNYNN----NNYNKKLYYKNYII 122


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 267 ISYCTVFFVYTY 232
           ISY T+FF+Y +
Sbjct: 129 ISYGTLFFIYVH 140


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 KFKDLLLYINKIYNLHYLKXL 398
           KF ++  Y+N+IY   +++ L
Sbjct: 76  KFSNIAPYLNQIYGGQFVRDL 96


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 358 YNNKSLNFLTECYSMAKKIKTQSLHYMQIKY*LLYSIFC 242
           YNN   N+    Y+  KK+    ++  QI   +   I+C
Sbjct: 334 YNNNYNNYNNNNYNNYKKLYYNIINIEQIPVPVPVPIYC 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,393
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)