Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K20
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.74 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   0.98 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   4.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    24   9.1  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 99  MDLDLIQKRETYKYRCNYILNEKLNEVQK 13
           +++DL +K++ Y+Y CN  LN  + + +K
Sbjct: 146 LEIDLSEKKDAYEYSCNK-LNSYMRQTKK 173


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 YEQVVKYHRLYKSAELTSSHLNSCLA*CHILKKYSSRRSRE-PRAYDRISA 429
           YEQ+       K  E +SSHL +  A  + +  ++S R +E  RAY R+ +
Sbjct: 530 YEQMRFRDHYQKHVEPSSSHLQTAAAYENSISPFASFRKKEAERAYSRMGS 580


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 134 INNLRPYLQLINNIDTKKK 190
           + N+R YL+  NNID+K +
Sbjct: 118 LRNVRTYLEAANNIDSKSE 136


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -3

Query: 385 TNTSLEYGTTLNSYLSETKSAP 320
           T  SL  GTT NSY S T S P
Sbjct: 117 TQVSLTNGTTTNSY-SNTNSLP 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,167
Number of Sequences: 5004
Number of extensions: 28395
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)