Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K17
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   1.2  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    27   2.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.1  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 485 DDDTENGNTSEMSNKNI 435
           D+DTEN NTS +S K+I
Sbjct: 714 DEDTENNNTSSISTKSI 730


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 266 WKTTDDLPILGELGCGSCERVYAPVCASDGQTYVNECRMNCKNSL 132
           W   +++P    +G G CER+   + AS+   Y    R+NC  +L
Sbjct: 95  WARIEEIPF-SRIG-GRCERLLPYLVASNPVNYGRPWRLNCAEAL 137


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 236 GELGCGSCERVYAPVCASDGQTYVNEC--RMNCKNSL 132
           G + CGSC +V      S  +  VN+C   +N KN++
Sbjct: 213 GHVYCGSCAKVLKTSKRSQSKCLVNDCGRYLNTKNAM 249


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 436 YFS*SASPIDRLRNNFTYSSI 374
           +FS S + +D LRNN+  SSI
Sbjct: 116 FFSKSGNTVDPLRNNYETSSI 136


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 487 KTMTQRTVIRAK*VIKIYFS*SASPIDRLRNNFTYSSIHFIYSQGTSYCFIIII 326
           K + QR+V+R   +I IY S S   +   +    +     IY     YCF  ++
Sbjct: 33  KPVLQRSVVRILMMIVIYSSVSFLSVYNEKIGSIFEPFREIYEAFALYCFFCLL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,389
Number of Sequences: 5004
Number of extensions: 55662
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)