Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K17
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0755 - 6343084-6345172,6345526-6346367                           29   3.7  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           29   4.8  
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514...    28   6.4  

>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 67  NRLLCSTQRPYLFTNTLSL-GSLKEFLQFIRH--SLT*VCPS 183
           NRLLC  ++ Y + ++L L G L  F QFI     LT +C S
Sbjct: 756 NRLLCCLEKSYGYLSSLKLQGELSRFPQFITSLCGLTELCLS 797


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 332 HHQETCVYVSLHIFALLHLSTQWKTTDDLPI-LGEL 228
           HH ++C+ + L +F L +L  +W   D LP+ +G+L
Sbjct: 428 HHMKSCL-LHLGLFHLRYLGLRWSRIDCLPVQIGKL 462


>01_01_0672 +
           5147916-5147976,5148087-5148166,5148329-5148973,
           5149111-5149341
          Length = 338

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 260 SSIACSDAAVRRYVEIHIHMFLDDDDE 340
           SS   S ++ RR+  I +H+ +DDDD+
Sbjct: 33  SSKGSSSSSARRFSTISMHLSMDDDDD 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,642
Number of Sequences: 37544
Number of extensions: 337378
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)