Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K17
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 42 4e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 42 4e-04
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 38 0.007
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 31 0.82
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical p... 28 7.6
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
CE V PVCA++G+T+ NEC M K+ + K + VK G C
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSC--ETKSMIKVKHQGTC 437
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1
Query: 224 CGSCERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
C SC + VC SDG+TY NECR+ +N+ ++ +FVK C
Sbjct: 465 CPSCTDEFKEVCGSDGKTYSNECRL--QNAACMAQKNIFVKYNSAC 508
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
C A VC +DG+TY+NEC + + ++ K+ + V + G C
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLA-ACKEQKD-ILVWKRGNC 363
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 197 PVCASDGQTYVNECRMNCKNSLRDPKE 117
P+C SDG Y N+C +N S RD +E
Sbjct: 693 PICGSDGIVYNNQCHLN-TISCRDQRE 718
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 200 APVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
+PVC+S G Y + C + ++ + K + VK +GRC
Sbjct: 258 SPVCSSHGVDYQSSCHL--RHHACESKTNITVKFFGRC 293
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
CE V PVCA++G+T+ NEC M K+ + K + VK G C
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSC--ETKSMIKVKHQGTC 445
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -1
Query: 224 CGSCERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
C SC + VC SDG+TY NECR+ +N+ ++ +FVK C
Sbjct: 473 CPSCTDEFKEVCGSDGKTYSNECRL--QNAACMAQKNIFVKYNSAC 516
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
C A VC +DG+TY+NEC + + ++ K+ + V + G C
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLA-ACKEQKD-ILVWKRGNC 371
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 200 APVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
+PVC+S G Y + C + ++ + K + VK +GRC
Sbjct: 266 SPVCSSHGVDYQSSCHL--RHHACESKTNITVKFFGRC 301
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 260 TTDDLPILGELG-CGS-CERVYAPVCASDGQTYVNECRMN 147
T D + E+ C + C + Y+PVCAS+GQ VNEC ++
Sbjct: 855 TIDKFEVCNEVKECNNACPKEYSPVCASNGQNIVNECELD 894
Score = 31.1 bits (67), Expect = 0.82
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNEC 156
CE+V P+C + G+T++N+C
Sbjct: 66 CEKVGTPICDNFGETHINDC 85
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 206 VYAPVCASDGQTYVNECRM--NCKNSLRDPKERVFVKRYGRCVLQ 78
V++PVC ++G T+ N C M N ++ K+ + V G+C Q
Sbjct: 928 VFSPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ 972
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 197 PVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRCV 84
P+CASD TY N C+ + L E +F + C+
Sbjct: 596 PICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSECL 633
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNC 144
C V PVC +D TY N C + C
Sbjct: 21 CPSVIRPVCGTDNVTYNNLCFLRC 44
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 197 PVCASDGQTYVNECRMNCKN 138
PVC G T++ EC +N +N
Sbjct: 700 PVCTDSGATFLTECELNIEN 719
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -1
Query: 215 CERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRC 87
C+ Y P+C ++G T+ N C + K + V G C
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQ-KEICESANSTIEVAYTGMC 813
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 218 SCERVYAPVCASDGQTYVNECRMNCKNSLRD 126
+C ++PVC S G T+ N C K + +
Sbjct: 817 NCPSDFSPVCDSKGSTHQNICHFGVKRCIAE 847
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 218 SCERVYA-PVCASDGQTYVNECRMNCKNS 135
SCE + PVC++DG Y + C C+ +
Sbjct: 529 SCENAHLYPVCSADGTAYFSPCHAGCREA 557
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -3
Query: 213 RKGLRACLRQRRADLR*RMPYEL*ELFKGSQRESVREKIRSLRTAKQ 73
RK LRA R RR +R R+ +L + ++G++R R+K R LR K+
Sbjct: 708 RKRLRAKRRLRRFIMRKRLKKKLRKRYRGAKRRRKRQKYR-LRYRKK 753
>Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical
protein T20B3.15 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = -1
Query: 236 GELGCGSCERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGR--CVLQSRRFV 63
G+ GSC+ + VC Y C N N P +++ + G+ C L
Sbjct: 214 GQWASGSCDEAMSFVCELPATIYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLA 273
Query: 62 RLRN 51
+R+
Sbjct: 274 SIRS 277
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 218 SCERVYAPVCASDGQTYVNECRMNCKNSLRDPKERVFVKRYGRCVLQ 78
SC P C+S G CRMNC+N+ + + F ++Q
Sbjct: 38 SCRSTCRPTCSSSGGF---GCRMNCQNTCVNACNKQFAPTSSSSIVQ 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,489
Number of Sequences: 27780
Number of extensions: 316046
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -