Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K16
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   4.2  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   5.6  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   7.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.8  

>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 422 T*W*VVTVAHGLQQCQGQSQAAAYRL*QIHCANRPGTYLNFCL*RL 559
           T W +V++ HGLQ C   +   A+ +  +      G +  FC+ RL
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLV--VSATGHDGPFGAFCVKRL 244


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 309 FLRFPFEAIHGLFQELRAFKLLFLNSIFTNFSNE 208
           FL+     I+G F  LRAF    +N++F  F  E
Sbjct: 260 FLKTTLHRIYGKFLSLRAFIRRSINNLFLQFVYE 293


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 475 LPLALLKSMGDGNHSPSGGPYARLPXKGNKKKNSL-IQTSMKY*TNIDLGL*TVKQIFTL 299
           LPL L+K +G    + S    A L         SL I  S+K  T+  +   ++K IFT 
Sbjct: 311 LPLNLVKILGLKPDTSSFEKCAELMLTNQISTRSLLISKSIKKLTSFSILTQSIKGIFTA 370

Query: 298 SF*SYSWVVS 269
              S+ W +S
Sbjct: 371 RCHSFRWYMS 380


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 331 LSRYLFNISYSFVLASFFFYC 393
           L   L +I YSF+  SF F+C
Sbjct: 544 LDALLGSIHYSFLFVSFMFFC 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,763
Number of Sequences: 5004
Number of extensions: 58304
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)