Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K15
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    93   3e-20
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    43   6e-05
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   3.1  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   4.0  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.4  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 55/137 (40%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
 Frame = -1

Query: 786 YYWLFALYVAYHVNHPL----YTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTK 619
           Y+ L  L++AY +  P     Y  P    + I   G+    L N   HI+L++LRP G+K
Sbjct: 160 YHLLSGLFLAYFIYGPWHANDYIKPNHLLFLIV--GWAFAVLSNFRTHIILRDLRPAGSK 217

Query: 618 IRRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIG 439
            R IP   G       N VS PNY +E   WLFF ++TK   + +F   G  QM VWA  
Sbjct: 218 KRVIPTGYG------FNLVSFPNYFFESLGWLFFALLTKSWASWIFLFVGSAQMFVWAKK 271

Query: 438 KHRNYKKEFPDYPKGRK 388
           KH  Y KEFP+YP+ RK
Sbjct: 272 KHARYLKEFPNYPRSRK 288


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 588 PFSLLLNFVSCPNYTYEFGSWL--FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKE 415
           P+  L  +VSCPNY  E+  W   +        P   F  +    M   A+  H+ Y K+
Sbjct: 207 PYGGLFQYVSCPNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKK 266

Query: 414 FPDYPKGRKA 385
           FP YP  R+A
Sbjct: 267 FPKYPANRRA 276


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 639  LRPPGTKIRRIPKPDGNPFSLLLNFVSCPNY 547
            L PP T +RR+ +P   P   L + ++C NY
Sbjct: 1587 LNPPLTVVRRLNEPPYVPDDYLPSVMTCVNY 1617


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 757 LSCEPSPIHCSLYYLLLHRTWRFCSLRIRKPEHSHTFEE 641
           L+ E +P + SL + +    ++ C L  +KPE+S T E+
Sbjct: 769 LALEKNPENPSLLFNVAFVQFQLCELIRQKPENSRTVED 807


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 NNLIYYYHTIP*RTKINKNHCPLIC 211
           + L+++ H+IP   ++  NH  ++C
Sbjct: 130 DELVFFQHSIPAYVQLTNNHGTILC 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,010
Number of Sequences: 5004
Number of extensions: 71867
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)