Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K15
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 105 5e-23
11_01_0535 + 4234282-4235082 35 0.085
09_01_0057 - 916973-917287,917371-917495,917587-918241 31 0.79
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 29 5.6
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 28 7.4
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813... 28 7.4
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697... 28 7.4
01_06_1704 + 39305989-39306186,39306282-39306789,39307094-393071... 28 9.7
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 105 bits (251), Expect = 5e-23
Identities = 54/125 (43%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Frame = -1
Query: 789 AYYWLFALYVAYHVNHPLYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLR-PPGTKIR 613
AYYW F Y+AY+ NHPLYT IG G +LC++ N HILL+NLR P G
Sbjct: 193 AYYWTFGAYIAYYCNHPLYTPVSELQMKIGFGFGILCQIANFYCHILLRNLRSPSGNGGY 252
Query: 612 RIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKH 433
+IP+ L N V+C NYT E WL F I T+ +F M WA+GKH
Sbjct: 253 QIPR------GFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTNWALGKH 306
Query: 432 RNYKK 418
R KK
Sbjct: 307 RRLKK 311
>11_01_0535 + 4234282-4235082
Length = 266
Score = 34.7 bits (76), Expect = 0.085
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = -1
Query: 741 PLYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTKIRRIPKPDGNPFSLLLNFV 562
PL A C +GL FV N++ L L+ G K +IPK DG L + V
Sbjct: 152 PLTVARCL----VGLALFVWGMWTNIAADRELLRLKEAG-KGYQIPK-DG-----LFDLV 200
Query: 561 SCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGRKA 385
+CPNY E WL + ++ A F + A + Y +F D YP RKA
Sbjct: 201 ACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYPASRKA 260
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 738 LYTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTKIRR 610
LY+AP + IG C+ + S+ L L PPG I+R
Sbjct: 296 LYSAPASPSGVIGASACFSCDSSSSSVDSLFAALEPPGRPIKR 338
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 272 ILTLIISINRYWLVPWWVSDDILEGSGFCLFW 177
I+TLI + W P W+ DD+ +G +W
Sbjct: 511 IITLIARVTGTWHSPGWIPDDLNKGHLDYYYW 542
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 28.3 bits (60), Expect = 7.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 402 GSLGIPSCSCDVYRWPK 452
G +G+ +C C++Y WP+
Sbjct: 23 GRIGVGACGCEMYVWPR 39
>05_04_0083 +
17780665-17780764,17781070-17781124,17781193-17781313,
17781361-17781429,17782047-17782274,17782477-17782666,
17783303-17783694,17784380-17784427,17784816-17785400
Length = 595
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 230 PWWVSDDILEGSGFCLFWYATVWCGNNK 147
PWW++ LEGSG W W +K
Sbjct: 35 PWWLTGHDLEGSGCVWEWGLHPWLPKSK 62
>02_04_0581 -
24068122-24068355,24068693-24068906,24069675-24069755,
24069853-24070024,24070806-24070884,24071384-24071477,
24072065-24072147,24072284-24072401,24072457-24072461
Length = 359
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 606 ECGVSSCRAGEGSSKVCECSGFLIRKEQNLQV--LCSNK*YRE 728
E G ++C A CEC G + +N +C+NK +R+
Sbjct: 50 EAGCTNCSADSTCKDDCECRGLYMSCSKNCHCSDMCTNKPFRK 92
>01_06_1704 +
39305989-39306186,39306282-39306789,39307094-39307137,
39307243-39307398,39307431-39307549,39308176-39308950
Length = 599
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 263 LIISINRYWLVPWWVSDDILEGSGFCLFWYATVWCGNNK*DY*LI 129
L++ R P W+ DDI G FW T C N Y LI
Sbjct: 544 LVVVAARRGGAPGWIPDDINRGHLDYFFWLLTALCVANFAAYLLI 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,669,671
Number of Sequences: 37544
Number of extensions: 452088
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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