Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K09
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 65 1e-11
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 36 0.006
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.42
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 27 2.3
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.2
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 6.9
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 9.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.1
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 64.9 bits (151), Expect = 1e-11
Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Frame = -2
Query: 470 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 315
G A L P Y+KY W Q+ YL L W L+K + L S + +I
Sbjct: 83 GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139
Query: 314 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 135
L V + FHL IE YL +L++CSEL+R +VNSV G+Y P + ++++ F
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199
Query: 134 XXXXXXXXXXXXRFDATK 81
FD K
Sbjct: 200 QVLSLKNDSLRRHFDGLK 217
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 35.9 bits (79), Expect = 0.006
Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 1/172 (0%)
Frame = -2
Query: 656 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGIAPACGKARLLFEKA 477
F F+ L ++Q+ RE I + +E+ S+ +L ++ P +FEK
Sbjct: 5 FLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKK 64
Query: 476 -HDGYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP 300
H LK + + K+ Q Y + WL+ G L S + + + ++
Sbjct: 65 IHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKDSSFRISINF 124
Query: 299 VELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELN 144
+ DY++G+ M E+ R V + ++ ++ + KF+ L+
Sbjct: 125 I-----------DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLH 165
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.42
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -2
Query: 452 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 276
DA+ F H F+T Y Y I T+ + KG + TM + L + +
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196
Query: 275 LDIEDYLIGLLTMCSELSR 219
+D Y+ L + LSR
Sbjct: 197 IDFPIYVFSSLFLYHPLSR 215
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 641 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 528
++LD+ E+ + T CK+VD+I ++ ++ I E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 493 RRALPHAGAMPASL*CITWSTVVASREIWSTSLHI 597
RR +P PA C++W+ V + +WS+ HI
Sbjct: 128 RRCIPDEH--PAKRLCLSWAIVGMNAWVWSSVFHI 160
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 634 STKNKNYARRFGLYVKRLTKFLGK 563
STK A +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 698 KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQ 576
K+ +C NE NK++ K+++ ++++ + I+ IC ++ Q
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ 305
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 196 RVTEFTARRDNSEHIVNSPIR*SSMSKWKPSFNSTGLTPNISAMVSCEARIPFSSHI 366
R + T R NSE+ +N+P S + F G T +V E P SS +
Sbjct: 192 RAKDETMRNQNSEYALNNPNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKL 248
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 335 HETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSR 219
H T+AEI + KE + D D+ G +C+ L R
Sbjct: 4051 HATLAEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYR 4089
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,398
Number of Sequences: 5004
Number of extensions: 56760
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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