Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K09
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 103 1e-22
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 34 0.11
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 31 1.3
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 29 5.4
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 28 7.2
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 28 7.2
03_05_0071 - 20491521-20492813 28 7.2
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 28 7.2
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 103 bits (248), Expect = 1e-22
Identities = 72/220 (32%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Frame = -2
Query: 656 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGIAPACGKARLLFEKA 477
F F+ LD+ LR+ IR + EV+ SR A+ L ++H +A GKA+ E
Sbjct: 81 FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVI 139
Query: 476 HDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVS 303
Y+RL + + P Y++Y WR TQ ++A WLE G L H E LG
Sbjct: 140 KGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCM 199
Query: 302 P----------------VELKEG---FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYER 180
P ++LK F LD+EDYL GL M ++ R VN VT GDY+
Sbjct: 200 PGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDC 259
Query: 179 PLRISKFVMELNAGFXXXXXXXXXXXXRFDATK--VRREE 66
P ++ F+ +L+A F +FD K +RR E
Sbjct: 260 PRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLRRVE 299
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 287 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMEL 147
E +++ DY++G+ + EL RLA+ ++ G+ E I FV ++
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDI 172
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 539 HYNEAGIAPACGKARLLFEKAHDGYARLKDAVPPTDY 429
HYN + AP+ G ++ L DGYA L++ PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 227 ILSTSSIAQSDSLQCPNGNLLLTP---LD*HLIFQPWSRVKPGFPS 355
+LSTS +Q L CP GNL+ P L L F W R G+ S
Sbjct: 881 VLSTSECSQPIMLGCPTGNLIPYPSIRLSFFLSFHGW-RGSQGYDS 925
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 431 NRLVVQHLSVL--RIHRGPSRKVDELCHMPEQCRLHCSVLLGALWSL 565
N + + HLS+L R+ R +D L MPE C L + W++
Sbjct: 770 NSMRIPHLSILDLRVVTMEPRDLDVLARMPELCSLRLDITRRFPWTV 816
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 710 RLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL 549
+L + K NE IN+I F + +E+E R I +E+ + TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 338 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 201
SH+ ++ G +P + EGF + D + LL SR+A V
Sbjct: 49 SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = -2
Query: 728 NKIKEPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELR--ETIR-----TICKEVDQIS 570
+++++ RL +K +K +EL+ ++F Q ++E+E + ET+ E+ +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159
Query: 569 REATTVLQVIH 537
+E T + +H
Sbjct: 160 QETTVSITEVH 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,584
Number of Sequences: 37544
Number of extensions: 374810
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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