Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K09
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-9|CAB04341.1|  307|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC091125-2|AAK27887.2|  202|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z81533-9|CAB04341.1|  307|Caenorhabditis elegans Hypothetical
           protein F36G9.14 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = -2

Query: 722 IKEPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL-- 549
           IK   ++++ V   +   I K+    +  +DQ  +L ETIR     +D I    TT+   
Sbjct: 7   IKVVNIIMEKVDPIERLTIRKVSRKLRILIDQISDLFETIR-----ID-IENTLTTIYLN 60

Query: 548 -QVIHYNEAGIAPACGKARLLFEKAHDGYA 462
            + I Y E GI    GK +++  + H G A
Sbjct: 61  NRNIFYKENGIVEFDGKRKVIEGELHTGMA 90


>AC091125-2|AAK27887.2|  202|Caenorhabditis elegans Hypothetical
           protein Y67D2.5 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 716 EPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIR 600
           EP  + K+ K  +NE I ++    Q +LD+E E+++T R
Sbjct: 20  EPCHVAKYHKWMENEEIRRLTGSEQLSLDEEYEMQKTWR 58


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 689  KMCDNELINKIFSDFQKNLDQEQELRE--TIRTICKEVD 579
            KM D E   K   D QKN+DQEQE  E  T   + KE D
Sbjct: 3719 KMWDEE--EKEEQDQQKNMDQEQEAAEDQTDEMVAKEDD 3755


>AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical
           protein C49A9.7 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 625 NKNYARRFGLYVKRLTKFLGKRPQCSK*YTTMKPALLRHVAKLVYFSRRP 476
           N  Y  +FG +  R+   +G  P C+  +T +  ++ R+ A +    +RP
Sbjct: 122 NYYYVWKFGSFYCRINNLMGITPICASVFTMIVMSIERYYAIIHPLKKRP 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,340
Number of Sequences: 27780
Number of extensions: 320272
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)