Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K05
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z72518-1|CAA96699.2|  395|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 661 LKGFKCGTPCNLFTYLSRQRLKVKSLVFRIR*LKLFY 551
           L G +CG  C + T+ SR  L +  L      + +FY
Sbjct: 57  LPGSECGIVCGILTFNSRTDLSISQLTKAFEFMTIFY 93


>Z72518-1|CAA96699.2|  395|Caenorhabditis elegans Hypothetical
           protein ZC374.1 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 688 SVVYILFYRLKGFKCGTPCNLFTYLSRQR 602
           S V  +FY+L  F  GTP N+F ++   R
Sbjct: 16  SEVIEMFYQLAFFIIGTPINIFAFVKTSR 44


>AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = -3

Query: 524 TTVDL*IYILTFVSSCKQN*MDNVILMCN*ILSTNLTFELHVNIHIIYEC*LFLSILMSH 345
           ++VD+ +  +TF+        D      N ILS  LT    +N    YE  L+L+ LMS 
Sbjct: 47  SSVDIIVMFITFILPVTMTDEDYAAFR-NSILSPILT----INCTFFYEHPLYLTFLMSI 101

Query: 344 LCNVQIYSNYNQYF 303
                ++  +NQ+F
Sbjct: 102 QRIYAVFQPFNQHF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,037
Number of Sequences: 27780
Number of extensions: 324521
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)