Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K04
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    55   1e-08
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    31   0.28 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   2.6  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.5  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   7.9  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   7.9  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   7.9  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = -1

Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
           I NP+Y+G W+P  I NP + G W   +I NP+Y  D +      +  VG +LW ++   
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNI 399

Query: 640 IFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 548
            F +  +      A+  G E    + + E+++
Sbjct: 400 RFSNIYVGHSIEDAERLGNETFLPKLKAEREL 431



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 799 GVWAPXQIDNPAYKGPWVHPEIDNPEY 719
           G W P  I NP Y+GPW  P I NPE+
Sbjct: 333 GEWKPPMIRNPNYRGPWSPPMIPNPEF 359


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 350 LHARTLRTPRYSMSWHSLINHNSLQLI 430
           LH  +L T RY+MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVK 256
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 177 SPSTRTSVQNNGHIFTYTQHVPTNR*NSSQTHAQC 281
           SP   TS  NN   +T TQ++ TN  N +    +C
Sbjct: 293 SPYYLTSFDNNVRSYTPTQYLGTNYSNGTAVDGKC 327


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 652 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEG 560
           KS T+F D+  IT  PA+ K+R    KK+  G
Sbjct: 20  KSETVFLDEAAITKPPASKKKRKNRKKKKNNG 51


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 251 PIRRDMLCVSKYVSVVLY*CPCRWGL 174
           P+ +  +C+   +SVV+  CPC  GL
Sbjct: 466 PMGKFAVCLKLTISVVVVACPCALGL 491


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 746 DPWAFVSWVI-NLXWCPNALVVWVV 817
           D ++  SW I N+ W P  LV W++
Sbjct: 7   DSFSGKSWTIDNVQWTPQNLVAWIM 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,467
Number of Sequences: 5004
Number of extensions: 63594
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)