Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K04
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 100 2e-21
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 97 1e-20
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 92 6e-19
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 90 2e-18
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 73 3e-13
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 38 0.010
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 30 2.1
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 29 6.3
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 100 bits (239), Expect = 2e-21
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -1
Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
I NP+YKG W +I NP Y+G W P IDNP++ D +Y D + +G++LWQVKSGT
Sbjct: 277 IPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGT 336
Query: 640 IFDDFLITDDPAAAKE-RGEVIKKRQEGEK 554
+FD+FLITDDP AK E K ++ EK
Sbjct: 337 LFDNFLITDDPELAKTFAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 97.5 bits (232), Expect = 1e-20
Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -1
Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
I NP+YKG W ++ NP YKG W P I NP+Y D +Y D + +G++LWQVKSGT
Sbjct: 284 IPNPEYKGPWNQKKLKNPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGT 343
Query: 640 IFDDFLITDDPAAAKE-RGEVIKKRQEGEK 554
+FD+ LITDDP AK+ E K ++ EK
Sbjct: 344 LFDNILITDDPEYAKKFAEETWAKHKDAEK 373
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 91.9 bits (218), Expect = 6e-19
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -1
Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
I NP+YKG W +I NP YKG W P IDNPE+ D +LY + VG+++WQVK+G+
Sbjct: 275 IPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGS 334
Query: 640 IFDDFLITDDPAAAKE-RGEVIKKRQEGEKK 551
+FD+ LI DDP A+ EV +E EK+
Sbjct: 335 VFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = -1
Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
I NP YKG W +I NP YKG W P IDNPE+ D +LY + +G+++WQVK+G+
Sbjct: 275 IPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGS 334
Query: 640 IFDDFLITDDPAAAKERGE 584
+FD+ LI DDP A++ E
Sbjct: 335 VFDNILICDDPEYARKAAE 353
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Frame = -1
Query: 814 NPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIF 635
NP YKG W IDNP YKG W EI NPEY + + D I A+G+++W ++ G +F
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILF 377
Query: 634 DDFLITDDPAAA--------KERGEVIKKRQEGEK 554
D+ LI DD A K + EV K++++ E+
Sbjct: 378 DNILIADDEKVATSILEKSWKPKYEVEKEKEKAEE 412
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 658 QVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 554
+VKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 286 F*HCACVWLEFYRFVGTCCV*VNMCPLFCTDVRVDGDYA 170
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 173 VIPIYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSIG 307
++ +T++S K RT L TC Y N +LKTN + G
Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTNFANYG 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,146,248
Number of Sequences: 37544
Number of extensions: 405933
Number of successful extensions: 1175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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