Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_K04
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   120   2e-27
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   120   2e-27
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    31   1.4  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        31   1.4  
AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    29   4.3  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    29   4.3  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    29   5.7  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   7.5  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    28   7.5  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   9.9  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
 Frame = -1

Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
           IDNP+YKG W P QI NPAYKG W+HPEI+NPEYTPD  LY  +   A+G DLWQVKSGT
Sbjct: 261 IDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGT 320

Query: 640 IFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 551
           IFD+ +ITD    A+    E   K +  EK+
Sbjct: 321 IFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
 Frame = -1

Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
           IDNP+YKG W P QI NPAYKG W+HPEI+NPEYTPD  LY  +   A+G DLWQVKSGT
Sbjct: 261 IDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGT 320

Query: 640 IFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 551
           IFD+ +ITD    A+    E   K +  EK+
Sbjct: 321 IFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
 Frame = -1

Query: 820 IDNPDYKGVWAPXQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGT 641
           I NP YKG W   +I NPA+KG W    IDNP Y           I AVG+++W +    
Sbjct: 366 IKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENI 425

Query: 640 IFDDFLIT---DDPAAAKERGEVIKKRQE 563
           +FD+ LIT   +D +   ++   +K+++E
Sbjct: 426 LFDNILITSSEEDSSDVAKQTFYVKQKEE 454


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 106 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 276
           H+P    +P+     I + N     RNP     Q K    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 106 HVPAHGARPITKH*IITYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 276
           H+P    +P+     I + N     RNP     Q K    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 816 TTQTTRAFGHQXRLITQLTKAHGSIPKSTTQSTLLIQTCTSAT 688
           TT TT++        T  T +H     +TT +T +++TC  AT
Sbjct: 260 TTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPAT 302


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 816 TTQTTRAFGHQXRLITQLTKAHGSIPKSTTQSTLLIQTCTSAT 688
           TT TT++        T  T +H     +TT +T +++TC  AT
Sbjct: 577 TTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPAT 619


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 716 SVLWVVDFGMDPWAFVSWVINLXWCPNALVVW 811
           SVLW+VD G   WA +   + L     A  +W
Sbjct: 207 SVLWIVDIGWFRWALIFASVGLSGTVLARAIW 238


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 716 SVLWVVDFGMDPWAFVSWVINLXWCPNALVVW 811
           SVLW+VD G   WA +   + L     A  +W
Sbjct: 197 SVLWIVDIGWFRWALIFASVGLSGTVLARAIW 228


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 716 SVLWVVDFGMDPWAFVSWVINLXWCPNALVVW 811
           SVLW+VD G   WA +   + L     A  +W
Sbjct: 197 SVLWIVDIGWFRWALIFASVGLSGTVLARAIW 228


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 742 PEIDNPEYTPDSNLYKRDEICAV---GLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKK 572
           P++ +P+Y    N+   D++  V    L    V    + D+ +        +E GE  KK
Sbjct: 271 PDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKK 330

Query: 571 RQEGEKK 551
           + E +KK
Sbjct: 331 KDEKDKK 337


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
            protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 248  SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 415
            +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 857  TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916

Query: 416  SLQLIV 433
             LQ ++
Sbjct: 917  DLQCLI 922


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 248 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 415
           +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504

Query: 416 SLQLIV 433
            LQ ++
Sbjct: 505 DLQCLI 510


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 390 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 253
           D  YL V      R +LLK  + +S  I     F    VRVF  NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,446
Number of Sequences: 27780
Number of extensions: 368649
Number of successful extensions: 1089
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)