Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_K02
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 116 2e-26
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 116 2e-26
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 113 2e-25
08_01_0778 + 7548307-7549220,7551682-7552021 29 5.2
07_01_0243 - 1783903-1784658 29 5.2
06_03_0860 + 25484826-25485758,25486155-25486406 29 5.2
07_03_1086 + 23858419-23859423,23859527-23859610 28 9.0
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 28 9.0
04_04_1097 - 30859963-30860302,30862130-30863058 28 9.0
01_06_1261 - 35826513-35828941,35829201-35829294 28 9.0
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 116 bits (280), Expect = 2e-26
Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Frame = -3
Query: 309 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 130
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 129 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNK 1
YGI KLQI + DD VS+D L E+ E +Y+QS DI AFNK
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNK 228
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 116 bits (280), Expect = 2e-26
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Frame = -3
Query: 309 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 130
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 129 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNK 1
YGI KLQI + DD VS+D L E+ E +++QS DI AFNK
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNK 244
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 113 bits (271), Expect = 2e-25
Identities = 56/100 (56%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Frame = -3
Query: 291 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 112
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 111 QISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNK 1
QI + DD VS+D L EE E ++VQS DI AFNK
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNK 223
>08_01_0778 + 7548307-7549220,7551682-7552021
Length = 417
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 186 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 13
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 261 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKVDVY 320
Query: 12 AF 7
+F
Sbjct: 321 SF 322
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -1
Query: 485 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 366
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 186 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 13
R + + LL V +A +G L+ +C + +K + W+ E+ K + Y + VD+
Sbjct: 221 RDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVY 280
Query: 12 AF 7
+F
Sbjct: 281 SF 282
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 132 AYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAA 10
A GIH+L +SC E +I L E+E + S+ AA
Sbjct: 44 AAGIHRLLLSCAAEASDGTISSLVAELESPSSSLDSLRRAA 84
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 186 RSISTDGLLW-GAAKLVPLAYGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 13
R + + +L+ G + +G+ ++ C +EDD + W+ E+ K + Y + VD+
Sbjct: 420 RDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVY 479
Query: 12 AF 7
+F
Sbjct: 480 SF 481
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 186 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 13
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 266 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDQKVDVY 325
Query: 12 AF 7
+F
Sbjct: 326 SF 327
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = -3
Query: 636 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 457
K +ES S+ +V LAG + E+ KVISLE I+ ++N LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,821,907
Number of Sequences: 37544
Number of extensions: 352119
Number of successful extensions: 816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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