Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J23
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   135   9e-33
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.6  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   3.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   5.9  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   7.8  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   7.8  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  135 bits (326), Expect = 9e-33
 Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 4/161 (2%)
 Frame = -3

Query: 767 PFDSMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFM 594
           P  S P G+F+++++KRVYSN+D  + ++P+F+E FDPENYS+W  +Y YPE+L + VFM
Sbjct: 254 PLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFM 313

Query: 593 SCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FPLSSDWQVDYE 420
           + NLI G FQRL+  RK  F    + GE+ ++TI+G +V +G + V  F ++ DW     
Sbjct: 314 TNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW----G 369

Query: 419 SYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIFK 297
           SY + KLD +  E K  ++D ++W+    +GR+   GK+ K
Sbjct: 370 SYTFTKLDINKPEDKAFIEDAWAWD-KPIEGREVADGKVCK 409


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 367  SRTTSRGTEPTKTVESSTRARYSSECRPTSS 275
            S TTS  T  + T+ SSTR+  +SE   TSS
Sbjct: 987  SSTTSGLTSSSSTIPSSTRSESNSESASTSS 1017


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 434 QVDYESYDWKKLD 396
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 466 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTR 311
           R S S  R+I    T P   R++    ++ +N   T     EP +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 475 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 588
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 208 IYI*MFLFCKVFYSYCMKCVYIGWTLVGIHLNILPWLNFLPSLSVPFHEK 357
           +YI M  +  +FY Y      +G  ++GI + IL  L   P + V +  +
Sbjct: 355 LYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPIIYVHYRRR 404


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 6/182 (3%)
 Frame = -1

Query: 796 SLKSLRSPRTPSTLCLKVPSTWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMLNTNT- 620
           S   L S  T  T    +P T   SS+STP    +    TS  S+          +TN+ 
Sbjct: 104 SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSN 163

Query: 619 --PRNSLKCS*AVTLLRV--CSRG*TKCANRLSHPSACLVKTTIPPSLECGCGAERSSCS 452
             P  S  C+ + ++      S   T     +   S       IPP+         S   
Sbjct: 164 PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223

Query: 451 RCRLIGRWTTS-PTTGRNWILRARRPRNLSRTTSRGTEPTKTVESSTRARYSSECRPTSS 275
                   +TS PT G + +     P     +TS  + P     +S+    SS    TS+
Sbjct: 224 TTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 283

Query: 274 QC 269
            C
Sbjct: 284 SC 285


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -1

Query: 748 KVPSTWMISS--VSTPTKTKLNLFLTSGRSLTPRTIPFGMLNTNTPRNSLKCS*AVTLLR 575
           K+PS++ I +  + +P+ ++L +      +L    IP  +LN+  PR +L      TL+ 
Sbjct: 260 KLPSSFTIVNDPLKSPSSSRLRI---RNITLCADKIPRPLLNSKLPRKTLVLDLDETLIH 316

Query: 574 VCSRG 560
             SRG
Sbjct: 317 SVSRG 321


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = -2

Query: 399 GSFERGDQETCPGLLLVERNRQRR*KVQPGQDIQVNADQRPANVYTFHTITIKNFTKKKH 220
           G F  GD++  PG+L V +N Q   K Q G ++ +       N    H + + N      
Sbjct: 172 GLFGPGDRQLVPGMLSVLKNGQT--KFQLGDNLNLFDFTYIENAAYAHLLAMDNLLSSNP 229

Query: 219 SNVNRWMLAIFGTVLNLYNF 160
           +   +      G V+  ++F
Sbjct: 230 TANGQVFFITNGQVIYFWDF 249


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 676 SGRSLTPRTIPFGMLNTNTPRNSLKCS*AVTLLRVCSRG*TKCANRLSHPSAC 518
           SGR +  R + +    T   R S K    VTL  VC RG +  +NR+     C
Sbjct: 163 SGRKIQ-RPVAYNPNATALKRKSRKVD-MVTLCSVCQRGHSPLSNRIVFCDGC 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,631,489
Number of Sequences: 5004
Number of extensions: 81823
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)