Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J22
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    52   1e-07
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    36   0.007
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    28   1.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   7.2  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.2  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
 Frame = -3

Query: 792 LDXLEAGMETVTNTAVFMLLHVVRNEDVQRKLHQEIDDIIGRDRNH--LLDDRIRMVYTE 619
           L  L A  +  ++   ++   +  + DV +K+ +E   I   D +    LD   +M YT 
Sbjct: 314 LSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTR 373

Query: 618 AVILETLRISTVASMGIPHMALNDAKLG-NYIIPKGTFILLSLY-ELHHGPHWKDPETFR 445
           AV+ E LR+     M +P+       +  +Y +PK   ++ +LY  LH    + +PETF 
Sbjct: 374 AVVKECLRLRPPVLM-VPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPEPETFN 432

Query: 444 PERFLTKEGNILQD--EWLIPFGIGKRRCIGEGLARSEL 334
           P+R+    G   Q    W++ FG G   C+G+  A + L
Sbjct: 433 PDRW-APNGLAEQSPKNWMV-FGNGPHVCLGQRYAVNHL 469


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
 Frame = -3

Query: 783 LEAGMETVTNTAVFMLLHVVRNEDVQRKLHQEIDDIIGRDRNHLLDDRIRMVYTEAVILE 604
           L AG  T   T V++L  +    ++   L +E   ++G +     D    M     VI E
Sbjct: 286 LMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYKDMPLLNYVIQE 345

Query: 603 TLRISTVASMGIPHMALNDAKLGNYI-IPKGTFIL----LSLYELHHGPHWKDPETFRPE 439
           TLR+       +  +  +    G+ I IP   ++L    L+  E  +  H  D +  R  
Sbjct: 346 TLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRWN 405

Query: 438 RFLTKEGNILQDEW------------LIPFGIGKRRCIGEGLARSELFMFLTHILQKF 301
             + ++ N  Q ++             +PFG G+ RCIGE  A    +M L+ I+ KF
Sbjct: 406 DRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFA----YMHLSTIISKF 459


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 278 SFLGILRWNF*RI*VRNMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRNRSGRNVS 457
           S   ILRW+F ++  +N  SS  +N SP   ++ I K +   +C     LV N + R  S
Sbjct: 124 SIFSILRWSFQKLGFQNQASSILSNRSP-SGQYVIRKNIEKLAC-----LVHNEAMRRCS 177


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 326 NMKSSERANPSPIQRRFPIPKGMSHSSCKMLPSLVRN 436
           N  + E+ N  P+Q   P+P  MS +S  +  S + N
Sbjct: 41  NRLAVEKPNIQPLQGHSPVPSFMSTASTNISSSKINN 77


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 574 HRCDSRYPQSFKNYRFCVHHSYSVVKQMITIATDYVIY 687
           H C + Y    ++  + +HH+ S     +T   DYVI+
Sbjct: 368 HSCPTLYHDDAEDIYYDLHHTESYSNINLTKTPDYVIH 405


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 251 MDFHCPLSNSGLFSNREKH 195
           M FH P+SNSG  + R  H
Sbjct: 200 MQFHLPISNSGAATPRSVH 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,229
Number of Sequences: 5004
Number of extensions: 70077
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)