Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J21
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 685 EDEEYKRVNFEKFTKLSTVFQKENGTVTAGNAST 584
           EDEE            +      N T+TAGNA+T
Sbjct: 202 EDEECTEATAGAVVLETCQRNSNNSTITAGNANT 235


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 642  FVNFSKLTLLYSSSSANITGAPLFC 716
            + N+S   L ++S    +  AP+ C
Sbjct: 1149 YTNYSMQVLAFTSGGDGVKSAPIHC 1173


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 457 LLGSQWDHIPHQQIQ 501
           LL S   H PH QIQ
Sbjct: 910 LLQSNQQHFPHHQIQ 924


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,394
Number of Sequences: 438
Number of extensions: 5139
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)