Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J19
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    31   0.23 
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.0  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.6  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   6.6  

>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 444 TSDPDETVYLRREKGIERQYRLKCKKCALPIYYKHDQESNVAFIIDG 304
           TSD ++ VY++  K   ++Y         PI+Y H    N +F  +G
Sbjct: 185 TSDAEDLVYIQNSKATNKKYMATVS----PIFYTHFTSKNYSFFSEG 227


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 120 YANNARIIEKQLERKGMNKRQ 58
           Y + A+++ K LE+KG+NK +
Sbjct: 52  YRHEAQLLSKVLEKKGLNKEK 72


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 501 LRPFDSARVIDGSKHAHKITSDPDETVYLRREKGIERQYRLKCKK 367
           L+P D   + D S ++H     P++ VY+R    I+    L  K+
Sbjct: 325 LQPSDYHLLPDPSSNSHSFVISPNDIVYVRERNQIDHVKYLVSKE 369


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 275 PPSPGVWTNAPSIIKATLLS 334
           PP PG  TNAP  +K+  +S
Sbjct: 421 PPPPGFSTNAPKAVKSPEIS 440


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 671 YRSFTFEITCQKLYQEVLFAPTRK-IKKSIMKPN 573
           YR+ T  +T  + YQ+ L+ PT+K +KK+ M  N
Sbjct: 42  YRNHTSCMTEAQRYQKGLYRPTKKELKKAKMNGN 75


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
 Frame = -2

Query: 633 VSRSIVCSDTKDQEEYNETKP-LHIYYCLCGQMSLILDCTIDKLPLRPFDSARVIDGSKH 457
           +S S   S++   E  + +K  L  + CL  ++S  L     K+   P  +AR+ +G+K 
Sbjct: 95  ISTSTDASESSSFEIVDLSKEELSKWICLFNRISDSLPTPQKKVLFHPAMNARLEEGTKK 154

Query: 456 AHKI-----TSDPDETVYLRREKGIERQYRLKCKKCALPIYYKH-DQESNVAFIID 307
            H I         ++  Y   +  I   Y     +  L  Y +H  Q+ NV  +ID
Sbjct: 155 KHAIQQASLLGHMEKLHYFDNQGSI--YYEFGAGRAELSRYVQHCSQQENVYILID 208


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 108 HCLHSCQPLLWPQFH 152
           H  H C+ +LWP FH
Sbjct: 272 HYNHYCKNILWPTFH 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,675
Number of Sequences: 5004
Number of extensions: 64208
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)