Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J19
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1211 - 11546407-11546466,11546550-11546618,11546777-115468...    57   2e-08
03_05_1088 + 30301654-30303480                                         29   3.0  
04_04_1382 - 33141860-33142153                                         28   9.1  

>07_01_1211 -
           11546407-11546466,11546550-11546618,11546777-11546865,
           11547046-11547142,11547238-11547391,11548295-11548409,
           11549182-11549250,11549996-11550110
          Length = 255

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = -2

Query: 525 DCTIDKLPLRPFDSARVIDGSKHAHKITSDPDETVYLRREKG-IERQYRLKCKKCALPIY 349
           D  + K+P R  D A V+D  KH  ++       V L+R +G +E+Q+R+ C  C L + 
Sbjct: 62  DTQLQKMPKRKTDRAHVLDKKKHLSRLNVKEAGKVLLKRGEGKLEKQFRMSCLGCGLFVC 121

Query: 348 YKHDQESNVA---FIIDGALVQTPGEGGVTDIYKQVALTQ 238
           Y+ ++E  +A   +++DGAL     E    D      +TQ
Sbjct: 122 YRSEEELELAPFIYVVDGALSSVAAETNPHDAPVPPCITQ 161


>03_05_1088 + 30301654-30303480
          Length = 608

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
 Frame = -2

Query: 735 HPTKVIINXHSRXA--LFIHFQPIPFLYI*NNMPKVVSRSIVCSDTKDQEEYNETKPLHI 562
           H   V    H+R A  LF HF P P LYI N M    + +   + +         +P  +
Sbjct: 62  HFATVSFPHHARAAETLFEHFTPRPNLYIYNLMLSSAAAAAAAASSSPSR-----RPAAL 116

Query: 561 YYCLCGQMSLILDCTIDKLPLRPFDSARVIDGSK-HAHKITSDPDETVYLR 412
           Y  +        + T   L L+  D+ R   G + HAH + +     VYLR
Sbjct: 117 YMSMLASSIHPDEQTFLSL-LKSVDAERRSVGKQVHAHVVVTGLHSRVYLR 166


>04_04_1382 - 33141860-33142153
          Length = 97

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 87  VASL*FLHCLHSCQPLLWP-QFHLPL 161
           VA+  FLH  H   PLLWP    LPL
Sbjct: 9   VAARGFLHLFHLSAPLLWPLNLWLPL 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,824,462
Number of Sequences: 37544
Number of extensions: 375422
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)