Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J17
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   5.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 290 VVPLAIVMLHSLTIIFTDNRS 228
           V+P   +ML +LT+++ D+RS
Sbjct: 260 VIPAVTMMLLTLTVLWLDSRS 280


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 54  YQYTTYXNTSDFYKNVYY 107
           Y+Y+ Y N +++ K +YY
Sbjct: 89  YKYSNYNNYNNYNKKLYY 106


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/40 (20%), Positives = 22/40 (55%)
 Frame = +1

Query: 10  HLNLCH*FITHKSRFISTQHMXTLAIFIKMFIISLPKGLK 129
           ++ +CH FI+H    +S      + I++    +++P+ ++
Sbjct: 153 YIAICHPFISHTMSKLSRAVKFIIVIWLLALCLAVPQAIQ 192


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 YYCKRNDNVSVPKECFSYLLSLGQI 344
           Y  +  DN+ +P++C  + + L ++
Sbjct: 116 YLRRYEDNIFLPEDCLLFTIELDRV 140


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 375 IVFHITFILHTNTHADLSWKV-LNHNSTPTTLPF 473
           I+ ++ FILH     D+ W++  N    P  + F
Sbjct: 276 IIANLNFILHLFCLLDVQWRIPFNGIQMPNLMVF 309


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 YYCKRNDNVSVPKECFSYLLSLGQI 344
           Y  +  DN+ +P++C  + + L ++
Sbjct: 131 YLRRYEDNIFLPEDCLLFTIELDRV 155


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 390 TFILHTNTHADLSW--KVLNHNSTPT 461
           T + H  TH +++W  + +  N+ PT
Sbjct: 172 TIVFHLETHPNVTWYSQCVTFNAFPT 197


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  YQYTTYXNTSDFYKNVYYFLTKRSKMLSYI 143
           Y+Y+ Y N +++  N Y    K+    +YI
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,630
Number of Sequences: 438
Number of extensions: 4702
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)