Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J13
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    71   1e-13
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    29   0.58 
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   1.8  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    25   7.2  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    25   7.2  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    25   7.2  

>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 31/75 (41%), Positives = 43/75 (57%)
 Frame = -1

Query: 304 PPDKGSFPLDHEGICKKTMVRYMKCLIXXXXXXSLCRDEAKEYLACRMENNLMAKEDWNN 125
           PP++GSFPLDH G C   M +Y++C+         CR  AK+YL CRM+  L  K+D  N
Sbjct: 6   PPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQCRMDTGLFGKDDMKN 65

Query: 124 LGFQENKEERXAFMS 80
           LGF  ++      +S
Sbjct: 66  LGFHGDENATSTSLS 80


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 411 LLYREKSISLLLFTKFIVYNYDLLILSCRLIIVKINR 521
           LL R  S SLL FT+ + Y   L + SC+  I   N+
Sbjct: 81  LLRRLSSTSLLAFTRHLKYYLSLYLPSCKFEICSTNQ 117


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 454 LVNSKRLIDFSRYKRFPTFQTYT 386
           L+N KR ID   +KRF  +++YT
Sbjct: 549 LLNGKRDIDVQDWKRFTDYRSYT 571


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 5   LSTLYILFNPLKNLTST 55
           ++TL +L NPLK +TST
Sbjct: 106 MTTLMLLVNPLKAITST 122


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 328 GQKQFIPTPPDKGSFPLDHEGICKKTMV 245
           G K+F     D G+F    EG+ KKT +
Sbjct: 51  GNKKFRALRLDSGNFSWGSEGVSKKTRI 78


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 328 GQKQFIPTPPDKGSFPLDHEGICKKTMV 245
           G K+F     D G+F    EG+ KKT +
Sbjct: 51  GNKKFRALRLDSGNFSWGSEGVSKKTRI 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,248
Number of Sequences: 5004
Number of extensions: 35276
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)