Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J11
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.95 
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    27   3.8  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   6.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.7  

>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 695 ALYLNKNNSQAVNVKRIKVTKNLIVGLNHFTLISLNSTGIDIQTY 829
           A +L + + + V VKR++  K   VG NHF L     T +DI+T+
Sbjct: 251 AWFLTEEDRKLV-VKRLRANKQG-VGNNHFKLYQFKETMLDIRTW 293


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 74  SFCLHLAPTLSKNHLHNSXQRGHVFCTQTLADFSSDMSKLTAVNSCHSPMNFDHEF 241
           SFC +LAP+LS  +L    +         L +F   +  L +V S  +P+ F H F
Sbjct: 153 SFCENLAPSLSTKNLEKYEK-----IVLALLNFDIYVISLPSVESFLTPLIFQHVF 203


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 325 HANFKIKIFLLININFVRK 381
           HAN + K   L+NINFVRK
Sbjct: 569 HANARTKKKELLNINFVRK 587


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 124  IMKMIFRECWSEMQAKRCE 68
            +  MIF ECWS++Q+ + +
Sbjct: 961  LQPMIFMECWSQIQSTKLD 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,891
Number of Sequences: 5004
Number of extensions: 63247
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)