Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J07
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    48   2e-06
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    32   0.090
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    28   1.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   3.4  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   4.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   5.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
 Frame = -2

Query: 844 VRSDTTPTEWAVFKFE---GARIVCSARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKR 674
           V S      WA+F +E   G  +   A G+D  EF  +F ++   FG+LR++  D  +  
Sbjct: 21  VLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK--DVNTGL 78

Query: 673 KKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFKDALNRAG 494
            KF+ + W G   +   +   S   A + +++  + V++     S++++D     +  A 
Sbjct: 79  NKFVLVCWCGE--AAARKGLFSIHMATVSNLLKGYHVQITGRESSDLNMDDIIRRVADAS 136

Query: 493 GANY 482
           G+ Y
Sbjct: 137 GSKY 140


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +3

Query: 573 FDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRN 752
           F ++S+  A+S  ++      TF P+  ++IN+  L    P    R   + SSS + +  
Sbjct: 6   FLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSIST 65

Query: 753 SVKSLPLAEHTIRAPSNLNTAHSVG 827
           S  S P    +  +PS+ +T+ S G
Sbjct: 66  SHDSQPSTSSS--SPSSTSTSSSSG 88


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 570 KFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDI 686
           K + +++   +SVDI ARL+T   GP  V+  N  R+DI
Sbjct: 7   KDETLTIPEGVSVDIKARLVT-VKGPRGVLKQNLRRVDI 44


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 820 EWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAF 716
           EW VF     R    +  +DF +FR+Q  DDE  F
Sbjct: 888 EWNVFAQYKRR---ESNATDFEDFRSQVGDDESKF 919


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 629 HRHVRSYPRHEHKFLAFRHLVSHLQPEVSEC 721
           H  +RS+  +  KFL   HL+ HL    S C
Sbjct: 23  HFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 775 ARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKA 596
           +R   F  FR   +D +R   +LRL      SKR K +   W   NVS+++   ++  K 
Sbjct: 212 SRFQTFETFRKPLAD-KRRIEFLRL------SKRMKKLEELWTSENVSMLDALLLNKAKR 264

Query: 595 IIKDII 578
           + + I+
Sbjct: 265 LEQSIV 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,043
Number of Sequences: 5004
Number of extensions: 70650
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)