Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J02
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.65 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.65 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 122 NSKITRLSTYNNNNN 78
           N+ I+ +S YNNNNN
Sbjct: 87  NNYISNISNYNNNNN 101


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 122 NSKITRLSTYNNNNN 78
           N+ I+ +S YNNNNN
Sbjct: 325 NNYISNISNYNNNNN 339


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 254 HSHL*FHVNFFNTINIKTLIISL 322
           H HL  H+    T+N+  L++SL
Sbjct: 126 HQHLRTHLRGTLTVNVSVLLLSL 148


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 122 NSKITRLSTYNNNNN 78
           N+ I+ +S YNN+NN
Sbjct: 87  NNYISNISNYNNDNN 101


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 661 ELHNFV*IVFCDADALDISMIC 726
           E H F     CD DA D  M C
Sbjct: 740 EAHCFALCHCCDFDACDCEMTC 761


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 72  FNSRKKNRCKYANFNVIN 19
           +N+   N CK   +N+IN
Sbjct: 343 YNNNYNNNCKKLYYNIIN 360


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 485 WNRF*QQLALHNYL*NIPDVTLNSNWLDKTDKIKHRIYLN 366
           WN   +Q  LH +    PD+   S  LD+  K     ++N
Sbjct: 175 WNEERKQYYLHQFATGQPDLNYRSAALDQEMKNVLTFWMN 214


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 178 LNSEKKSILKCGSKNIRIKKECNL 249
           L    +SI  C SK   I KEC L
Sbjct: 72  LAESSRSIDPCASKYCGIGKECEL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,747
Number of Sequences: 438
Number of extensions: 4132
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)