Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_J01
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   168   7e-43

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  168 bits (408), Expect = 7e-43
 Identities = 84/158 (53%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
 Frame = -3

Query: 635 AHHIFTVGIDSDTRAYXTSATIIIAVPTGIKIXR*LATIHGTXINYNP-NIL*RLGFVXL 459
           +HH+FTVG+D DTRAY ++AT++IA+PTGIKI   LAT+ G  I ++   +L  +GF+ L
Sbjct: 295 SHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLIL 354

Query: 458 FTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXGFIN*YPLFTGLSLNS 279
           FT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS          +    P   GL  N 
Sbjct: 355 FTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNE 413

Query: 278 YILKIQFXTIFIGVXXTFFPXHFLGLAGIPRRYSDYPD 165
            +  IQF  +FIGV   F P HFLGL G+PRR  DYP+
Sbjct: 414 TLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,454
Number of Sequences: 5004
Number of extensions: 24016
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)