Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I24
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    28   0.62 
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    27   1.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   7.6  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   7.6  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -1

Query: 439 SIIEVN*QHLGVARVETSARQPRSDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVCIF 260
           SII  N +      V  S  Q ++     +  C G    + S+ S N +VI +    C+ 
Sbjct: 284 SIISSNREEESFYSVHDSVTQKKTRTSWLIFQCSGEFRLVFSIESSNLLVIESHVPSCVL 343

Query: 259 CN*SIPVVKYVSRLFFYFL 203
            N +  V+ ++  L+ YFL
Sbjct: 344 -NINSQVIAFLLYLYGYFL 361


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 388 SARQPRSDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVC 266
           S+ Q +  A +EV   RGR +     R+  Q + SNL CVC
Sbjct: 21  SSCQHQERALIEV-RTRGRPLLCKKCRAIKQQLKSNLKCVC 60


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 233 VCFATFFLFFISYLLFNSIYYVVRFIQIFVT*LYNKIRTFNL-TELHRKILI 81
           VC    FLF +S+LL  +I ++   +++F T L    R F L  +  R++LI
Sbjct: 163 VCVFLSFLFSLSHLLSLAILFLPLLLRVFST-LSRLPRLFCLCLQKKRRVLI 213


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 212 LFFISYLLFNSIYYVVRFIQIFVT*LY 132
           LFF SYL+       ++F QIFV  L+
Sbjct: 187 LFFPSYLILRKCNSSIKFRQIFVVFLF 213


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 370 SDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVCIFC 257
           S A+L  P  + RH+    L  ++  ++S    +C +C
Sbjct: 388 SKAELSTPPSKRRHIDDADLVFHSSPLLSRSRFICCYC 425


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 230 CFATFFLFFISYLLFNSIYYVVRFIQI 150
           C A  FLF+I++  +++ YY   F+Q+
Sbjct: 371 CCAMSFLFYITFYCWDNYYY--SFLQV 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,102
Number of Sequences: 5004
Number of extensions: 32662
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)