Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_I24
(469 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 45 2e-05
AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans AP... 45 2e-05
Z81117-14|CAB03313.3| 272|Caenorhabditis elegans Hypothetical p... 28 3.8
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 27 5.1
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 27 5.1
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 27 5.1
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 27 5.1
Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical ... 27 6.7
AF025460-4|AAB70987.1| 156|Caenorhabditis elegans Hypothetical ... 27 6.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 8.9
Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical pr... 27 8.9
X59156-1|CAA41870.1| 77|Caenorhabditis elegans transposase pro... 27 8.9
U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine rece... 27 8.9
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2
Query: 468 RNVEGXDMLYQSLKLTNNIWVLLELKLQPGNPEATLSLKSRTVEVATCIFQAYEAII 298
R V+ +LY S+K TNN+ VL ELK+ TLSLKS+ + I + ++A++
Sbjct: 898 RQVDNQQLLYHSVKYTNNLNVLSELKVNSQTTSITLSLKSKNLMAIANINEVFQALL 954
>AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans APB-1
protein, isoform b protein.
Length = 226
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = -2
Query: 468 RNVEGXDMLYQSLKLTNNIWVLLELKLQPGNPEATLSLKSRTVEVATCIFQAYEAII 298
R V+ +LY S+K TNN+ VL ELK+ TLSLKS+ + I + ++A++
Sbjct: 169 RQVDNQQLLYHSVKYTNNLNVLSELKVNSQTTSITLSLKSKNLMAIANINEVFQALL 225
>Z81117-14|CAB03313.3| 272|Caenorhabditis elegans Hypothetical
protein T06E6.3 protein.
Length = 272
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 323 YSKPTKL*SNRNLKF--ELCMYILQLKYSSS*VCFATFFLFFISYLLFNSIYYVVRFIQI 150
Y+ P N L + LC YIL + Y +S T+F F IS F S++ + + Q+
Sbjct: 32 YATPMVFFVNEYLAYWSHLCGYILMICYKAS-----TYFHFIISLNRFLSVFTPIFYNQM 86
Query: 149 F 147
F
Sbjct: 87 F 87
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 286 SNLNCVCIFCN*SIPVVKYVSRLFFYFLSV-IYCLTAF 176
S+L+ CIF + +V Y FYF++V ++C T +
Sbjct: 323 SSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLY 360
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 286 SNLNCVCIFCN*SIPVVKYVSRLFFYFLSV-IYCLTAF 176
S+L+ CIF + +V Y FYF++V ++C T +
Sbjct: 388 SSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLY 425
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 286 SNLNCVCIFCN*SIPVVKYVSRLFFYFLSV-IYCLTAF 176
S+L+ CIF + +V Y FYF++V ++C T +
Sbjct: 323 SSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLY 360
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 286 SNLNCVCIFCN*SIPVVKYVSRLFFYFLSV-IYCLTAF 176
S+L+ CIF + +V Y FYF++V ++C T +
Sbjct: 388 SSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLY 425
>Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical
protein C54C6.4 protein.
Length = 156
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 317 KPTKL*SNRNLKFELCMYILQLKYSSS*VCFATFFLFFISYLLFNSIYYVV 165
K +L SN +L + CM +++ +S CF F L +S L S Y+++
Sbjct: 93 KSPQLCSNLSLHY-FCMSNIRMTFSFVYFCFFCFRLLQLSTWLLLSTYFII 142
>AF100659-7|AAC68967.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.4 protein.
Length = 688
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 412 LGVARVETSARQPRSDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVCIFCN 254
L V ++ S R P LE +G H I S + Y I++ + + + +FCN
Sbjct: 25 LNVVWLKLSFRVPLETLFLEYRQ-QGGHTLILSRQVYENILVRDTDFMSVFCN 76
>AF025460-4|AAB70987.1| 156|Caenorhabditis elegans Hypothetical
protein F53A3.1 protein.
Length = 156
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 270 YVYFAIKVFQ*LSMFRDFFFIFYQLFTV*Q-HLLCSPIYTNICNVTI 133
Y+Y AI F L++F FF I + F + + H + +CN +
Sbjct: 38 YMYNAILTFSFLALFYSFFTILLRFFELTELHFMSFNFAAMLCNFVL 84
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -1
Query: 397 VETSARQPRSDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVCIFCN*SIPVV 236
+E S +PR E+P CR + S S + SN N S+P++
Sbjct: 1581 IECSEIKPREQRDCEMPPCRSHYHNKTSSASMTSLSSSNSNTTSSASASSLPIL 1634
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -1
Query: 397 VETSARQPRSDAQLEVPNCRGRHVYIPSLRSYNQIVISNLNCVCIFCN*SIPVV 236
+E S +PR E+P CR + S S + SN N S+P++
Sbjct: 1581 IECSEIKPREQRDCEMPPCRSHYHNKTSSASMTSLSSSNSNTTSSASASSLPIL 1634
>Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical
protein T08D10.2 protein.
Length = 737
Score = 26.6 bits (56), Expect = 8.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 444 LYQSLKLTNNIWVLL-ELKLQPGNPEATLSLKSRTVEVATCIFQAYEA 304
LY+ LK TN + LL E KL+ P L LKS +++ I Q EA
Sbjct: 340 LYEVLK-TNRLTALLAEQKLKNTPPSDELLLKSLQIDIEKAIRQFDEA 386
>X59156-1|CAA41870.1| 77|Caenorhabditis elegans transposase
protein.
Length = 77
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -3
Query: 230 CFATFFLFFISYLLFN----SIYYVVRFIQIFVT*LY 132
CF+ +FL F ++ F ++YVV +I V LY
Sbjct: 40 CFSAYFLNFFQFIFFFFNIFQLFYVVFLFEILVLKLY 76
>U53339-6|AAA96202.1| 348|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 12 protein.
Length = 348
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 317 KPTKL*SNRNLKFELCMYILQLKYSSS*VCFATFFLFFISYLLFNSIYYVV 165
K KL + NLKF L Y + +S +CF + FF+ + + ++ ++
Sbjct: 46 KVFKLPFHGNLKFLLVSYFIGTFLFASIICFTFGYHFFVPFFVTSNCDLII 96
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 227 FATFFLFFIS-YLLFNSIYYVVRFIQIF 147
F FF++FIS +L F S + ++ + Q++
Sbjct: 34 FLVFFVYFISTFLAFTSFFIIIPYEQLY 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,187,441
Number of Sequences: 27780
Number of extensions: 172415
Number of successful extensions: 403
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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