Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I24
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.94 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.2  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   3.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   6.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   8.7  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -3

Query: 212 LFFISYLLFNSIYYV 168
           +F +S++LFN+IY++
Sbjct: 471 IFPVSFMLFNAIYWI 485


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 137 LYNKIRTFNLTE 102
           LY K RTFNL E
Sbjct: 55  LYQKARTFNLVE 66


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 137 LYNKIRTFNLTE 102
           LY K RTFNL E
Sbjct: 55  LYQKARTFNLVE 66


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 414 IWVLLELKLQPGNPEATLSLKSRTVE 337
           IWVLLE K  P        L++R  E
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQNRVKE 125


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 229 VSRLFFYFLSVIYCLTAFIM 170
           VSR+FF FL  +  +T +IM
Sbjct: 404 VSRVFFPFLFAVLNVTYWIM 423


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 414 IWVLLELKLQPGNPEATLSLKSRTVE 337
           IWVLLE K  P        L++R  E
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQNRVKE 125


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 56  ILYSQSSYLVYK 21
           +LY QS YL+Y+
Sbjct: 81  VLYQQSPYLMYE 92


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 79  LINILRCNSVKLKVLILLYSYVT 147
           +I++LRC    L V+++   +VT
Sbjct: 1   MISMLRCTFFFLSVILITSYFVT 23


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 79  LINILRCNSVKLKVLILLYSYVTNI 153
           +I++LRC  + L V+++   +VT +
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPV 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,881
Number of Sequences: 438
Number of extensions: 2443
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)