Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I16
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.9  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   9.9  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 122 VISSQNTILTCDGVDSNSSIACRQ 193
           VIS++N I+T  G+DS+    C Q
Sbjct: 388 VISAENKIVTYGGMDSHVHFICPQ 411


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 481 KYXVYLLQK*QYIHYNL*L*LRKG--EESRLTASLAERGEILAVVDLRRRHVVTLY 642
           +Y   L+QK + I   L    RK   +E R+T   +E   +++ +D  +RH   L+
Sbjct: 122 EYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,355
Number of Sequences: 5004
Number of extensions: 50904
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)