Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I15
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   8.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 404 FFLFTSFAYSFIFTLKFHVI 345
           FF+F SFA+ F   ++F V+
Sbjct: 278 FFVFLSFAFIFATIIQFAVV 297


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 740 RLFRGSYVICCNKYKRSSRTNASEAYRRLGGTVSYHPPRRKLP 868
           R   GSY         SS ++ +  +   GG++   PP RKLP
Sbjct: 61  RSLEGSYDSSSGDSPVSSHSS-NGIHTGFGGSIITIPPTRKLP 102


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 447 TNSFLFIIQSL*CVFFFVHEFCLFVYFYFEISCDIINL 334
           T S +F++    C FF + +  +F+Y  F     + NL
Sbjct: 81  TPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFALGNL 118


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 685 CKQILKNSASGSL*IPSIYVSRNK 614
           CKQILK SA       S    RNK
Sbjct: 7   CKQILKRSAESEFEGASSPKKRNK 30


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 837 TVPPSLL*ASEAFVRLDRLYLLQQ 766
           T PP L+     F  +DRLY + +
Sbjct: 42  TKPPFLVQLHSCFQTMDRLYFVME 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,572
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)