Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I13
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.82 
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    28   1.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.8  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 18/88 (20%), Positives = 36/88 (40%)
 Frame = -3

Query: 696 IILQHDQTLYRIINVLNNGDHGLCYIKAYISHYITYLLNRFPIQKPLRYLYFNQMNV*WQ 517
           ++L+H   + +++  +      L YI A + H++  +        PL  L   Q    W 
Sbjct: 18  VLLEHPAHVEKVLKTVEFDKSALRYIDAILDHHLKQIYRNLTSNSPLHTLSLLQKMASWN 77

Query: 516 PTPLRVHKRLKFSLIDFKTHILMNVIKL 433
                V     F  ID+ + I + +++L
Sbjct: 78  NGLACVR---VFQAIDWNSKIFIKMLQL 102


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 116 KLVTLKEEG*RTIYILPKEKFNCREHKRLSYNIK 217
           KL+ ++E   + IY+L K  F+C+E +R +Y ++
Sbjct: 81  KLLEVEE---KNIYLLAKSYFDCKEFERAAYTLQ 111


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +1

Query: 520 PLYIHLIKIKIPQWFLNWKTIQQIRNIMRDICFYITQSMISIIQNIYYPIQCLVML*YYR 699
           PL++ ++ +      LN  +  +++++++   FY  + + S        IQCL++L  YR
Sbjct: 267 PLFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERLVKSADNFTIESIQCLLILSIYR 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,338
Number of Sequences: 5004
Number of extensions: 73281
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)