Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I09
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71267-1|CAA95851.2|  172|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical p...    30   0.99 
AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl cholin...    30   0.99 
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical...    29   1.3  
Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical p...    27   5.3  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   7.0  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z71267-1|CAA95851.2|  172|Caenorhabditis elegans Hypothetical
           protein W01A8.4 protein.
          Length = 172

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -1

Query: 372 NNYGLSDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQF 193
           + Y LSD E   +  +   +  +++E+L++  +P     + G   D A+ R+ S  +TQ 
Sbjct: 42  HEYNLSDEEKKAVLWRYRVKEILKKEYLRREYDPHSFKYKEGVTMDPAMFRWYSADMTQA 101

Query: 192 EYFTVNKRT 166
           E+F    RT
Sbjct: 102 EFFRFTPRT 110


>Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -1

Query: 312 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVGP 133
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 132 MXTFG 118
           + TFG
Sbjct: 526 IITFG 530


>Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -1

Query: 312 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVGP 133
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 132 MXTFG 118
           + TFG
Sbjct: 526 IITFG 530


>AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl choline
           receptor alpha subunitDES-2 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -1

Query: 312 AEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSLFGFFVIVGP 133
           +E+  +FL  R  P            ++++    + V +FE+F      + F  FV+   
Sbjct: 466 SELSSKFLTSRMRPKSQKDNTFAAMQSSIKANRQLAVAEFEWFATVVERTCFVIFVVAFL 525

Query: 132 MXTFG 118
           + TFG
Sbjct: 526 IITFG 530


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 137 PTITKNPNKLVRLFTVKYSNCVTFMDRNLCNAVSKT*PASEAFFQGF--VLCFKNS 298
           P+ TK PNK+ +  + + S   T    + C + +KT  A E     F  V  FKNS
Sbjct: 585 PSYTKTPNKIFKKSSTQNSKITTAYQFSFCTS-AKTQAALEKCLNAFDGVAAFKNS 639


>AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical
           protein Y73B3A.6 protein.
          Length = 480

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 205 FHGQKPLQCCVENITSL--RSVFPGVCSLFQELPSHFSTP 318
           F     +Q C++N   L  R++ PG  SL Q L  HF+ P
Sbjct: 326 FKDHATIQSCMQNGVDLTIRNIPPGTTSLIQPLDVHFNGP 365


>Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 IQTVLLSWTETFAMLCRK 242
           + T+L SWT  F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235


>Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 189 IQTVLLSWTETFAMLCRK 242
           + T+L SWT  F +LCRK
Sbjct: 218 LATLLKSWTRPFLLLCRK 235


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 354  QISRSYLPYLQSITEFNRQFVMKTIWNGPIF 446
            QI  SY+ +    TE  RQ ++  IW   +F
Sbjct: 1286 QIGNSYVTFFHGCTELLRQVIIDEIWVNGLF 1316


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 298 GVLETKNKPLEKRFGGWLCFRHSIAKVSV 212
           G++  KN  L+  FG  LCF H+IA   V
Sbjct: 30  GIVVLKNPILKNAFGA-LCFSHTIANFGV 57


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 PNVNMGPTITKNPNKLVRLFTVK 187
           P++N+ PT   N  KL+R  TV+
Sbjct: 240 PHINLSPTAKSNHVKLIRALTVQ 262


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 304 ETGVLETKNKPLEKRFGGWLCFRHSIAKVSVHE 206
           + G+L+TKN  +  R    LCF HS A  ++++
Sbjct: 273 QQGLLKTKNSVISTRGMCELCFLHSTALEAINQ 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,682
Number of Sequences: 27780
Number of extensions: 181431
Number of successful extensions: 446
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)