Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I06
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   252   3e-68
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   1.1  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   5.7  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   5.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.7  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    26   5.7  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  252 bits (618), Expect = 3e-68
 Identities = 118/204 (57%), Positives = 152/204 (74%)
 Frame = -2

Query: 834 DEXMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFIN 655
           DE +++AE++K +K M F  V+FDTAPTGHTLR L+FP V+E+ LGKL  L S+  P IN
Sbjct: 124 DEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMIN 183

Query: 654 QIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETERLV 475
           Q+ S+ G+     D+F  KM+ M + I +VN QFK+P+ TTFVCVCI+EFLSLYETER++
Sbjct: 184 QMGSIMGVNANEQDLFG-KMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMI 242

Query: 474 QELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEK 295
           QELT   IDTHNI+VNQLLL  +  C  C AR K+Q+KYL QI +LYEDFHV K+P +  
Sbjct: 243 QELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQVPA 302

Query: 294 EVRGASAVNAFSELLLKPYDPPTS 223
           EVRG  A+ +FSE+L+KPY  PTS
Sbjct: 303 EVRGTEALKSFSEMLVKPYVYPTS 326


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 476 TKRSVS*SDRNSAIQTHTNVV*FGSLNCAFTCL 574
           TK  +  SD   ++++  NVV FG+LN   +CL
Sbjct: 778 TKLDLRLSDVTDSVRSRINVVKFGNLNSLLSCL 810


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 684 LKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKD 547
           LK+KV PFIN++     L        S K+ E +  +  + A+ +D
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 834 DEXMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQV 715
           D    Y ++  L+    F   V+D +  GH+  L SFP V
Sbjct: 662 DLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPYV 699


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 583 ISYQTSECTVQRPESNY 533
           ++YQ SECT+ + E+N+
Sbjct: 410 LAYQVSECTITKEETNW 426


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = -2

Query: 771 VFDTAPTGHTLRLLSFPQVVERGLGKLMRL---KSKVAPFINQIASLFGLADFNSDMFSN 601
           V+D+    + + L +F +  +   G++ +     +K   F  ++  +     F+SD+FSN
Sbjct: 435 VYDSISLKYVMDLATFEEPYDFNPGQIEKFIMNGNKKGAFSIRLNHIENSISFSSDLFSN 494

Query: 600 KMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE 484
            +    SV  Q        +Q T +   ++  L  ++T+
Sbjct: 495 PIKSSDSVSLQSTPSELITSQLTRIAKSLSSVLMRFDTD 533


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = -2

Query: 636 GLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE--RLVQELT 463
           G AD    +    + +M+S I  V+  F    +   +  C+ EF+ L  +E   + ++  
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCV-EFIHLVSSEANEICEKEA 62

Query: 462 RCGIDTHNIIV---NQLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKE 292
           +  I   +II    N       A     AA HK Q+K  E+ +  +E   V++  LL ++
Sbjct: 63  KKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDELLRQQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,090
Number of Sequences: 5004
Number of extensions: 70625
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)