Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I06
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723...   223   2e-58
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722...    69   5e-12
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807...    29   3.5  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    29   6.0  

>09_05_0014 -
           20071514-20071690,20071779-20071894,20072177-20072315,
           20072649-20072672,20072879-20072989,20073089-20073239,
           20073357-20073478,20074287-20074556
          Length = 369

 Score =  223 bits (544), Expect = 2e-58
 Identities = 116/209 (55%), Positives = 144/209 (68%), Gaps = 10/209 (4%)
 Frame = -2

Query: 834 DEXMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFIN 655
           DE MS+AE++KLV+ M++S VVFDTAPTGHTLRLL FP  +E+GL K+M LK+K    +N
Sbjct: 121 DEAMSFAEMLKLVQTMDYSVVVFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLN 180

Query: 654 QIASLFGLAD-FNSDMFSNKMDEMLSVIRQVNAQFKDP--------NQTTFVCVCIAEFL 502
           Q   LFGL D  N D    +++ M  VI QVN QFKDP        + TTFVCVCI EFL
Sbjct: 181 QATRLFGLGDELNEDAMLGRLEGMKDVIEQVNRQFKDPIWSNLLEKDLTTFVCVCIPEFL 240

Query: 501 SLYETERLVQELTRCGIDTHNIIVNQLLLRSSA-PCELCAARHKVQEKYLEQIADLYEDF 325
           SLYETERLVQEL +  ID HNII+NQ+L    A   +L  AR K+Q+KY++Q   LY+DF
Sbjct: 241 SLYETERLVQELAKFEIDAHNIIINQVLFDEEAVESKLLKARIKMQQKYIDQFHMLYDDF 300

Query: 324 HVTKLPLLEKEVRGASAVNAFSELLLKPY 238
           ++TKLPLL +EV G  A+  FS   L PY
Sbjct: 301 NITKLPLLPEEVCGVQALQNFSRHFLTPY 329


>02_05_0729 -
           31271566-31271730,31271799-31271933,31272210-31272284,
           31273003-31273068,31273154-31273222,31273303-31273377,
           31273518-31273628,31273947-31274009,31274064-31274453
          Length = 382

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
 Frame = -2

Query: 834 DEXMSYAEVMKLVKGMNFSA---VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAP 664
           DE ++ ++VM+ ++   +S    +VFDTAPTGHTLRLLS P  ++  +GK+++L+SK+A 
Sbjct: 206 DEAIAISKVMQFLEAQEYSMFRRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIAS 265

Query: 663 FINQIASLFG 634
             + I S+FG
Sbjct: 266 ATSAIKSVFG 275



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
 Frame = -2

Query: 504 LSLYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHK---------VQEKYLE 352
           +++ E+ RL   L    +    +IVNQ+L  SS+ C+ CA + K          Q + L+
Sbjct: 285 MAISESARLHSSLRNESVPVKRLIVNQILPPSSSDCKFCAIKRKGHLPSSFIQDQTRALD 344

Query: 351 QIADLYE--DFHVTKLPLLEKEVRGASAVNAFSELLLK 244
            I +  E    ++ + PL++ E+RG  A+    +++ K
Sbjct: 345 MIRNDPELMGLNLIQAPLVDMEIRGVPALKFLGDIVWK 382


>04_01_0616 -
           8069107-8069217,8070127-8070499,8070514-8070751,
           8070881-8071189,8071225-8071363
          Length = 389

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 700 RQADAFEVKGCPL---HQSNCVTVWTSRFQLGHVQQQNG*DV 584
           RQA+  EV+ C L    +  C  VW    + GHV   +G D+
Sbjct: 331 RQAEMLEVRSCSLDLKQRHPCQQVWKFDLEKGHVNVVSGADI 372


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 243 ASREVLKMHLQRKLLG---LPFPARVALSHGSLHTSLQFAPDIFLGPYAWLHIVHKEQ 407
           AS +++ +H   +LLG   +P+P  V +  G L  SLQ++P        +L ++H  Q
Sbjct: 644 ASLDII-IHSYHQLLGEGKVPYPVPVYIDEGPLDESLQWSPGDRFDISFYLMLLHANQ 700


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,174,596
Number of Sequences: 37544
Number of extensions: 428361
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)