Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I02
         (848 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase...    29   8.1  
AE013599-3479|AAM71130.1|  497|Drosophila melanogaster CG30272-P...    29   8.1  

>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
            polymerase-primase 180 kdasubunit protein.
          Length = 1490

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -1

Query: 707  ICSPLRAGLCERTLSLKKWQHYRLCRACVTQTVNVVYVLLNIYDGVLFLK*IVFFYGAGN 528
            +C         RT SL+K  H  LC+ C + T+   Y   ++Y+ + +L+  +F  G   
Sbjct: 1363 VCDHPDCNFNTRTHSLRKKSHRPLCQKCRSGTLLRQYTERDLYNQLCYLR-FMFDLGKQT 1421

Query: 527  VSMSATI 507
            +    T+
Sbjct: 1422 LQQKPTL 1428


>AE013599-3479|AAM71130.1|  497|Drosophila melanogaster CG30272-PA
           protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 731 NSASNVIKICSPLRAGLCER-TLSLKKWQHYRLCRACVTQTVNVVYV 594
           N+ASN++ I +PL  G+  +     ++WQ   +  A +    N+VYV
Sbjct: 396 NTASNIVPILTPLLVGIIVKDDHDREQWQIVFIISAVIFCVGNIVYV 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,045,598
Number of Sequences: 53049
Number of extensions: 545289
Number of successful extensions: 833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)