Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_I01
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 622 IKLKWAG*KKLKSSQFSPCVF 560
           +KL W   +  K S  +PC+F
Sbjct: 218 VKLNWPKKRVTKMSSINPCIF 238


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 117 LNYLRYYLISIH*FVLDFKTFCATNLWDKVTLLFH 13
           +N +   L+  H   L F TFC TNL   V    H
Sbjct: 249 VNEIEKRLLFSHNDRLGFLTFCPTNLGTTVRASVH 283


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 45  LLHRKS*NLTQINEY*XGSNVNNLT*STARGRDI-LYF 155
           +L R    LT IN+    + + NLT +T +G  + +YF
Sbjct: 663 VLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,667
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)