Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H24
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 49 7e-07
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 34 0.028
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 31 0.26
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 29 0.60
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 1.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 1.0
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 28 1.4
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 27 2.4
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 3.2
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 27 3.2
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.2
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 27 4.2
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.4
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 7.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 7.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 7.4
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 26 7.4
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 26 7.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 9.8
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 25 9.8
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 49.2 bits (112), Expect = 7e-07
Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Frame = -1
Query: 768 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 589
L + V + A EL+++ + +P F +++ +P +++LE L+ L + +
Sbjct: 196 LLEAVKMDNSTADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQST----LQLLGILS 251
Query: 588 YGTYKDYI----ENKSDYLELTTVQ---CKKLQHLTIATLATQ--EKCIPYSVLLEELDI 436
G DY+ EN + + +K++ LTIA+LATQ + Y + + L I
Sbjct: 252 GGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKI 311
Query: 435 KNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWCNACE 256
+ ++E II+ I A ++ G++ Q K + + + R + ++ + LA W ++
Sbjct: 312 -DENEVELWIIDVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLR 370
Query: 255 AVLNSVDQ 232
+L ++Q
Sbjct: 371 YMLQVMEQ 378
>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -1
Query: 321 DARLEDAASIADVLADWCNACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTL 142
D+ LED S +++ C+ +VL + ++ + QKA+ Q +E+K+ + K
Sbjct: 76 DSELEDPVSSNELIQTSCHLLTSVLTQLQTNLDKLKDSHQKALLRIQELEKKVSELSKNN 135
Query: 141 K 139
K
Sbjct: 136 K 136
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 264 HCTSRPGHQQWKLHLQAAHLCQGPRPLPH 350
H ++P H+ WK H + H + PRP+PH
Sbjct: 271 HNGTKPDHKPWK-HEEHCHHGKFPRPIPH 298
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.60
Identities = 30/145 (20%), Positives = 63/145 (43%)
Frame = -1
Query: 441 DIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWCNA 262
D+ N DL D++ + + + DQ + + D A + L+ + A++ N
Sbjct: 118 DLANAMDLFDIVDKNSASANRSKQADQRQLKTKADYAAFQADILKKVKN-CQTTAEYNNF 176
Query: 261 CEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSA 82
+ ++ + + N KA+ Q+ + + ++ ++ KTQ++ +A A +A
Sbjct: 177 VQDLIPLL---LTGLNATNLKAV--QKSVNKLVVNKEQQEKTQSKRGAAAPAAKPVSTAA 231
Query: 81 PKKNSSKSKTARNSAKLLAEEHIIE 7
P K K NS K +A++ E
Sbjct: 232 PSKKGGKPTVNVNSKKTVADKSAYE 256
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 28.7 bits (61), Expect = 1.0
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -1
Query: 669 ELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATL 490
E+ P L S P + ++T NLF K Y ++ DYL + + K + T + L
Sbjct: 379 EITNQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNL 438
Query: 489 ---ATQEKCIPYSVLLEELDIKNV 427
+EK IP +E +D+K+V
Sbjct: 439 EIFRIREKNIP----VEVVDLKDV 458
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 624 YATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCI-PYSVLLE 448
YA + YK Y+E +SDY EL K+L + + + CI S L+
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220
Query: 447 ELD 439
L+
Sbjct: 221 SLE 223
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -1
Query: 225 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 46
+ A + ++ ++HQ+GI L + K + Q +A+ A A KK +S+S+
Sbjct: 66 EHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKKAASESEKKA 125
Query: 45 NSAKLLA 25
AK A
Sbjct: 126 IKAKSAA 132
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 288 DVLADWCNACEAVLNSVDQHIQRANHQK 205
DV +DW +AC+AV N + + N Q+
Sbjct: 68 DVYSDWIDACDAVANQA-KEVDNINDQE 94
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.2
Identities = 38/145 (26%), Positives = 58/145 (40%)
Frame = -1
Query: 483 QEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLED 304
Q+ Y + E LD KNV D D IEA LD+E +R+E + D +ED
Sbjct: 423 QDPSWKYDRMPELLDGKNVADFVDPEIEAKLL-----ALDEEEERLEREGYYDSDQEIED 477
Query: 303 AASIADVLADWCNACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAEN 124
A E VL + I+ N A R ++ + +L ++T E
Sbjct: 478 ADE------------EEVLEKASR-IREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDEL 524
Query: 123 DESASGANAEPHSAPKKNSSKSKTA 49
S A S ++ S+++TA
Sbjct: 525 QSSLQSAGLPSDSIEERARSRARTA 549
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = -1
Query: 225 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 46
+ A + ++ ++HQ+GI L + K + Q +A+ A A K+ +S+S+
Sbjct: 66 EHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESEKKA 125
Query: 45 NSAKLLA 25
AK A
Sbjct: 126 IKAKSAA 132
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -1
Query: 210 QKQKAIRHQQGIEQK-----ILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSK 55
+ +K ++ QQ +++K I+Y+KKT++ ++ N + + +K K K
Sbjct: 41 EPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRKQKKK 97
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 540 LTTVQCKKLQHLTIATLATQEKCIP---YSVLLEELD 439
+ ++ CK+LQ L + Q KCI Y V+L++++
Sbjct: 1 MPSIDCKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 132 AENDESASGANAEPHSAPKKNSSKSKTARNSAKLLAEEHIIEK 4
A +D AS A + H ++ SKT +NS+++L + ++
Sbjct: 88 ASDDSEASLAENDLHPLDNDSTRTSKTLKNSSEVLTASKLTDE 130
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/67 (16%), Positives = 32/67 (47%)
Frame = -1
Query: 225 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 46
+ ++QK +++ + I +++ + + + EN+++ + E S N ++ + +
Sbjct: 16 EEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQ 75
Query: 45 NSAKLLA 25
S L A
Sbjct: 76 KSVNLNA 82
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 246 NSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNS 67
N V QR K+ A +H+Q E + +I KT+ T E+ AS P P +S
Sbjct: 200 NYVHLEEQRRLRLKRNAAKHRQLREPILKFISKTIST--EDGREASNYYVAPLEHPLCHS 257
Query: 66 S 64
+
Sbjct: 258 A 258
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 546 LELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 409
LE V+ KL+H T+ QE C + ++L+ + + L+ L
Sbjct: 295 LEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQL 340
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 93 PHSAPKKNSSKSKTARNSAKLLAEEH 16
PH A ++NSS NS K +A++H
Sbjct: 381 PHKAEEENSSSETDIVNSNKDVADDH 406
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -1
Query: 309 EDAASIADVLADWCNACEAVLNSVDQ 232
+D + D A WC C+A+ +Q
Sbjct: 17 QDKLVVVDFFATWCGPCKAIAPKFEQ 42
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 562 LNVVLICAIGKQIKSF*MSCIRSTLQL 642
LN+ + C I + I+SF +S +RST ++
Sbjct: 491 LNLNVCCCIAEPIQSFILSFLRSTYKV 517
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 492 LATQEKCIPYSVLLEELDIKNVRDLEDLI 406
+ QEK PY + +ELD+ V D E+++
Sbjct: 106 IRNQEKKDPYYYIRKELDVLKVLDHENVV 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,731
Number of Sequences: 5004
Number of extensions: 63126
Number of successful extensions: 230
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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