Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_H23
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 109 2e-24
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 91 6e-19
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 43 2e-04
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 42 3e-04
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 32 0.49
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 31 0.86
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 31 1.1
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 31 1.1
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 30 2.0
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 29 2.6
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 29 2.6
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 29 2.6
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 3.5
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 3.5
Z81586-3|CAB04691.1| 203|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z50110-4|CAA90443.2| 203|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical pr... 28 6.0
AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 28 6.0
AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine re... 28 6.0
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 109 bits (263), Expect = 2e-24
Identities = 80/236 (33%), Positives = 115/236 (48%), Gaps = 5/236 (2%)
Frame = -1
Query: 740 WVVAXLDALNESYAGVGVLIHPQVVMTGAH-IAYKYAPGNLRARAGEWDTQTIKEMLDHQ 564
W V L L G G LI P V+T AH A P + R G + + H+
Sbjct: 71 WTVQLLSRLGHHRCG-GSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGSP---HR 126
Query: 563 VRLVEEIIIHEDFNTKSLKN-DVALLRMHAPFNLAEHINMICLPD-PGDSFDTSKNCVAN 390
V V IH +N + D A++R+H P N + ICLP P ++ CV
Sbjct: 127 VTAVS---IHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVE---NRLCVVT 180
Query: 389 GWGKDVFGLQGRYAVILKKIEIDMVPNPRCNSLLQRTRLGTRFRLH-DSFVCAGGQEGR- 216
GWG + G A L++I + ++ C+SL +G R+H S +CAG G+
Sbjct: 181 GWGSTIEG-SSLSAPTLREIHVPLLSTLFCSSL--PNYIG---RIHLPSMLCAGYSYGKI 234
Query: 215 DTCQGDGGAPLACPIGDSRYKLAGLVAWGIGCGQKDVPAVYANVARMRSWVDRKMN 48
D+CQGD G PL C D ++L G+V+WGIGC + +P VY NV +W++ +MN
Sbjct: 235 DSCQGDSGGPLMCA-RDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWINLEMN 289
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 91.5 bits (217), Expect = 6e-19
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 2/189 (1%)
Frame = -1
Query: 608 GEWDTQTIKEMLDHQVRLVEEIIIHEDFNTKSLKNDVALLRMHAP-FNLAEHINMICLPD 432
G+WD + Q+ ++ I + + +D+A+L + P E+ ICLP
Sbjct: 85 GDWDNNQTDG--NEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIEFNEYAQPICLPS 141
Query: 431 PGDSFDTSKNCVANGWGKDVFGLQGRYAVILKKIEIDMVPNPRCNSLLQRTRLGTRFRLH 252
+ + CV +GWG GL RYA L+ I ++ C + Q +R
Sbjct: 142 KDFVYTPGRQCVVSGWGS--MGL--RYAERLQAALIPIINRFDCVNSSQIYSSMSR---- 193
Query: 251 DSFVCAGGQEGR-DTCQGDGGAPLACPIGDSRYKLAGLVAWGIGCGQKDVPAVYANVARM 75
S CAG EG D+CQGD G P AC D + LAG+++WG GC QK P +Y VA
Sbjct: 194 -SAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPY 252
Query: 74 RSWVDRKMN 48
SW+ +N
Sbjct: 253 LSWISAIIN 261
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 43.2 bits (97), Expect = 2e-04
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 11/175 (6%)
Frame = -1
Query: 554 VEEIIIHEDFNTKSLKNDVALLRMHAPFNLAEHINMICL-PDPGDSFDTSKNCVANGWGK 378
V+E IH +N ++ ND+ALLR+ + + I +CL D KN V G+G
Sbjct: 107 VKEAYIHSGYNNQTADNDIALLRISSDLSKL-GIKPVCLVHDDSKLLKQYKNGVVIGYGL 165
Query: 377 DV-FGLQGRYAVI----LKKIEIDMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGRD 213
+ G +I L+ + ++ + C + L ++ +CAG
Sbjct: 166 TLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSL-LSVKITGYQICAGAYL-HG 223
Query: 212 TCQGDGGAPLACPIGDSRYKLAGLVAWGIG-----CGQKDVPAVYANVARMRSWV 63
T GD G PL + Y G+ ++G Q P VY +++ W+
Sbjct: 224 TAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWI 278
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 42.3 bits (95), Expect = 3e-04
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Frame = -1
Query: 506 NDVALLRMHAPFNLAEHINMICLPD-PGDSFDTSKNCVANGWGKDV-FGLQGRYAVILKK 333
ND+ +L + + + E N CLP P + + N + GWG D G +++
Sbjct: 176 NDIVILELESTIDDVEGANYACLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQV 235
Query: 332 IEIDMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGRDTCQGDGGAPLACPIGDS-RY 156
+ + C GT DSF C +E ++ C GD G L DS R
Sbjct: 236 LTLATETLATCEE-----NWGTSIPF-DSF-CTAEEEDKNVCSGDSGGGLTFHQSDSARE 288
Query: 155 KLAGLVAWGIGCGQ 114
+ +V++G C Q
Sbjct: 289 FIIAIVSYGSDCVQ 302
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 31.9 bits (69), Expect = 0.49
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -3
Query: 636 RPGQ--FEGESRRMGHPDHQGNAGPPSETRRGNNHTRRFQHEKPQERRGAP-ADARALQP 466
RPGQ G R G P QGNAG P R GN + + G+P A RA QP
Sbjct: 172 RPGQPGRRGNDGRPGQPGPQGNAGQPG--RDGNPGQPGHPGKDGRRGHGSPGAPGRAGQP 229
Query: 465 RR 460
R
Sbjct: 230 GR 231
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = +1
Query: 40 PHAFIFRSTQDLMRATLA*TAGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSL 219
PH F + D M L T + F P P + S + G PSP SL
Sbjct: 13 PHYNPFALSNDFMPNPLMPTFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSL 72
Query: 220 PSCPP 234
P+ PP
Sbjct: 73 PTSPP 77
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -1
Query: 554 VEEIIIHEDF-NTKSLK-NDVALLRMHAPFNLAEHINMICLPDPGDSFDTSKNCVANGWG 381
V +++ +F ++ LK +D A++ + + +E++ ICLP P + +K+ GWG
Sbjct: 125 VRAVLVDGEFASSNCLKGHDWAIVEVEKRIHFSENVRPICLPRPNMYY--TKSLAVPGWG 182
Query: 380 KDVFGLQG 357
+ +F G
Sbjct: 183 R-IFNESG 189
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = -3
Query: 702 RWSRSPDTSSSRHDWRSHRLQVRPGQFEGESRRMGHPDHQGNAGPPSET---RRGNNHTR 532
RW +P + +S R+ + S H A PP T +R R
Sbjct: 192 RWGAAPASGTSDRADRNGGARGNDSPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAR 251
Query: 531 RFQHEK-PQERRGAPADARALQPRRAHQHDLP 439
+ + P+E R +P RA PR+A P
Sbjct: 252 EIRDSREPREVRRSPPPRRAASPRKASSPSAP 283
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = -3
Query: 702 RWSRSPDTSSSRHDWRSHRLQVRPGQFEGESRRMGHPDHQGNAGPPSET---RRGNNHTR 532
RW +P + +S R+ + S H A PP T +R R
Sbjct: 192 RWGAAPASGTSDRADRNGGARGNDSPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAR 251
Query: 531 RFQHEK-PQERRGAPADARALQPRRAHQHDLP 439
+ + P+E R +P RA PR+A P
Sbjct: 252 EIRDSREPREVRRSPPPRRAASPRKASSPSAP 283
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = -3
Query: 702 RWSRSPDTSSSRHDWRSHRLQVRPGQFEGESRRMGHPDHQGNAGPPSET---RRGNNHTR 532
RW +P + +S R+ + S H A PP T +R R
Sbjct: 192 RWGAAPASGTSDRADRNGGARGNDSPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAR 251
Query: 531 RFQHEK-PQERRGAPADARALQPRRAHQHDLP 439
+ + P+E R +P RA PR+A P
Sbjct: 252 EIRDSREPREVRRSPPPRRAASPRKASSPSAP 283
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = -3
Query: 702 RWSRSPDTSSSRHDWRSHRLQVRPGQFEGESRRMGHPDHQGNAGPPSET---RRGNNHTR 532
RW +P + +S R+ + S H A PP T +R R
Sbjct: 192 RWGAAPASGTSDRADRNGGARGNDSPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAR 251
Query: 531 RFQHEK-PQERRGAPADARALQPRRAHQHDLP 439
+ + P+E R +P RA PR+A P
Sbjct: 252 EIRDSREPREVRRSPPPRRAASPRKASSPSAP 283
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 RATLA*TAGTSFCPHPMPQATSPASL*-RLSPMGQARGA-PPSPWQVSLPSCPPAHTKLS 252
RA A P P+P AT P+ ++P+ A PP+P Q S P PP + S
Sbjct: 222 RAKAASAVAPEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNS 281
Query: 253 CRR 261
++
Sbjct: 282 LQK 284
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 RATLA*TAGTSFCPHPMPQATSPASL*-RLSPMGQARGA-PPSPWQVSLPSCPPAHTKLS 252
RA A P P+P AT P+ ++P+ A PP+P Q S P PP + S
Sbjct: 222 RAKAASAVAPEANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAKQNS 281
Query: 253 CRR 261
++
Sbjct: 282 LQK 284
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 40 PHAFIFRSTQDLMRATLA*TAGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSL 219
PH F + D M L + + F P P + S + G PSP SL
Sbjct: 169 PHYNPFALSNDFMPNPLMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSL 228
Query: 220 PSCPP 234
P+ PP
Sbjct: 229 PTSPP 233
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 40 PHAFIFRSTQDLMRATLA*TAGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSL 219
PH F + D M L + + F P P + S + G PSP SL
Sbjct: 169 PHYNPFALSNDFMPNPLMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSL 228
Query: 220 PSCPP 234
P+ PP
Sbjct: 229 PTSPP 233
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 40 PHAFIFRSTQDLMRATLA*TAGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSL 219
PH F + D M L + + F P P + S + G PSP SL
Sbjct: 19 PHYNPFALSNDFMPNPLMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSL 78
Query: 220 PSCPP 234
P+ PP
Sbjct: 79 PTSPP 83
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +1
Query: 40 PHAFIFRSTQDLMRATLA*TAGTSFCPHPMPQATSPASL*RLSPMGQARGAPPSPWQVSL 219
PH F + D M L + + F P P + S + G PSP SL
Sbjct: 169 PHYNPFALSNDFMPNPLMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGGTPSPHSSSL 228
Query: 220 PSCPP 234
P+ PP
Sbjct: 229 PTSPP 233
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 654 SHRLQVRPGQFEGESRRMGHPDHQGNAGPPSETRRG 547
+++ +V P G R G P G AGPP E +G
Sbjct: 262 TYKTEVGPAGRAGAPGRPGPPGQPGPAGPPGENGKG 297
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 654 SHRLQVRPGQFEGESRRMGHPDHQGNAGPPSETRRG 547
+++ +V P G R G P G AGPP E +G
Sbjct: 243 TYKTEVGPAGRAGAPGRPGPPGQPGPAGPPGENGKG 278
>Z81586-3|CAB04691.1| 203|Caenorhabditis elegans Hypothetical
protein T05F1.4 protein.
Length = 203
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 690 SPDTSSSRHDWRSHRLQVRPGQFEGESRRMGHPDHQGNAGPPSETRRGNNHTRRFQHEKP 511
SP + +R++ RP R G + PPS R G + R HEK
Sbjct: 74 SPSNHNQVQTYRNNPFDARPA-LSSNDRDQG----RNRFSPPSFRRDGRDSDRNGYHEKE 128
Query: 510 QE-RRGAPADARAL 472
+E RG+ D R +
Sbjct: 129 EEPTRGSRNDLRTI 142
>Z68507-1|CAA92826.1| 337|Caenorhabditis elegans Hypothetical
protein M18.1 protein.
Length = 337
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 633 PGQFEGESRRMGHPDHQGNAGPP 565
PGQ G+ GHP GNAGPP
Sbjct: 238 PGQ-PGQPGPDGHPGQPGNAGPP 259
>Z50110-4|CAA90443.2| 203|Caenorhabditis elegans Hypothetical
protein F18H3.1 protein.
Length = 203
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = -1
Query: 323 DMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGRDTCQGDGGAPLACPIGDSRYKLAG 144
D PR N++ Q T R+ + V +EG C G GGA PI ++
Sbjct: 24 DNASYPRFNAVYQPTVRLDVGRMGKNVVIL--KEGERIC-GIGGAIATVPIVQNKAYFQV 80
Query: 143 LV----AWGIGCGQKDVP 102
V WGIG GQK P
Sbjct: 81 TVQQTGTWGIGLGQKQSP 98
>U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical
protein F59A6.4 protein.
Length = 752
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -1
Query: 578 MLDHQVRLVEEIIIHEDFNTKSLKNDVALLRMHA 477
+LDH V +V+++ E++ K + D+ +L++ A
Sbjct: 116 LLDHDVYVVKDVEADEEYRMKVARKDLQILKIEA 149
>U41275-3|AAA82466.1| 612|Caenorhabditis elegans Hypothetical
protein T25D1.1 protein.
Length = 612
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 476 PFNLAEHINMICLPDPGDSFDTSKNCVAN 390
P NL E + +P+ G S DT+K C AN
Sbjct: 320 PENLEETVAKTTIPNIGFSVDTAKKCDAN 348
>AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical
protein Y51A2D.7a protein.
Length = 989
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 657 RSHRLQVRPGQFEGESRRMGHP-DHQGNAGPPSETRRGNNH 538
R+HRL VRPG E+R+ HP H+ A P++ R G H
Sbjct: 548 RAHRLLVRPG-IPAETRQ--HPRSHEPFAQFPNDFRLGTAH 585
>AC006677-1|AAF39948.1| 331|Caenorhabditis elegans Serpentine
receptor, class x protein26 protein.
Length = 331
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 566 QVRLVEEIIIHEDFNTKSLKNDVALLRMHAPFNLAEHINMIC 441
++RL +II +F + L + LR HA + + +N C
Sbjct: 286 EIRLSSPLIIDSNFQNQQLYRPLKYLRRHAFYKIFNKVNYKC 327
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -3
Query: 600 GHPDHQGNAGPPSET-RRGNNHTRRFQHEKPQER---RGAPADARALQPRRAHQHDLPPG 433
G P G GPP + + G+N + E+P R RG P D+ P +D P G
Sbjct: 189 GRPGEMGPPGPPGDDGKPGSNGEKGQDVEQPTPRKGPRGPPGDSGPPGPEGDAGNDGPVG 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,878
Number of Sequences: 27780
Number of extensions: 439457
Number of successful extensions: 1894
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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