Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H23
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    54   1e-09
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           28   0.11 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.11 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
 Frame = -1

Query: 686 LIHPQVVMTGAHIAYKYAPGNLRARAGEWDTQTIKEMLDHQVRLVEEIIIHEDFNTKSLK 507
           +I  + V+T AH         L    GE D  +  E     +  + ++IIH  ++     
Sbjct: 192 IISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKD 251

Query: 506 ----NDVALLRMHAPFNLAEHINMICLPDPG--DSFDTSKNCVANGWGKDVFGLQGRYAV 345
               ND+ALL+        + +   CLP     DSF  S   V  GWG   F   G  + 
Sbjct: 252 DWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL-GWGHTSF--NGMLSH 308

Query: 344 ILKKIEIDMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGRDTCQGDGGAPLACP-IG 168
           IL+K  ++M+    C        +          +CA   +G+D CQ D G P+      
Sbjct: 309 ILQKTTLNMLTQVECYKYYGNIMVNA--------MCAYA-KGKDACQMDSGGPVLWQNPR 359

Query: 167 DSRYKLAGLVAWGIGCGQ 114
             R    G+++WG  CG+
Sbjct: 360 TKRLVNIGIISWGAECGK 377


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 504 VLEAFRVEIFVYDYFLDESHLVVQHF 581
           V + FR  + +YD+F D S  +  HF
Sbjct: 327 VSDVFRYGLLIYDFFKDSSFRIQHHF 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 124 PMPQATSPASL*RLSPMGQARGAPPSPWQVSLPSCPP 234
           P   A  P      SP    RG+PP+P Q   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 477 RVHPQERHVVLEAFRVEIFVYDYFLDESHLVVQHFLDGLGVPFSGSRPQI 626
           +VHP   H V +    E+   DY     HL  +H LD      +  R Q+
Sbjct: 273 KVHPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQV 322


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 612 SRRMGHPDHQGNAGPPSETR 553
           +RR+   D +GN G P E R
Sbjct: 3   TRRVKRSDGRGNGGTPEEKR 22


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 168  TYGTGQRGSTVALASVPALLSPGAHEAVVQTEP 266
            T G       +A  ++ +  SPG  +  +QT+P
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGNQQQTIQTQP 1299


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 426 PRVREADHVDVLG 464
           P V E+D VDV+G
Sbjct: 200 PSVSESDEVDVIG 212


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 602 WDTQTIKEMLDHQVRLVEEII 540
           WD  T+KE+ +   R + +++
Sbjct: 59  WDQMTVKELANSAKRDINDVL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,874
Number of Sequences: 438
Number of extensions: 5304
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)