Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H22
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   185   4e-48
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   184   7e-48
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    48   9e-07
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   1.00 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   1.7  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.3  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   7.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.3  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  185 bits (450), Expect = 4e-48
 Identities = 89/135 (65%), Positives = 102/135 (75%)
 Frame = -2

Query: 475 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 296
           L+KKR FR F YRGV+L+QLLD+  EQL++L H        RGL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 295 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHXLGE*XGTXKP 116
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGH LGE   T KP
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 115 XKHGRPGIGATHSDK 71
            KHGRPGIGATHS +
Sbjct: 135 TKHGRPGIGATHSSR 149


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  184 bits (448), Expect = 7e-48
 Identities = 89/135 (65%), Positives = 102/135 (75%)
 Frame = -2

Query: 475 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 296
           L+KKR FR F YRGV+L+QLLD+  EQL++L H        RGL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 295 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHXLGE*XGTXKP 116
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGH LGE   T KP
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 115 XKHGRPGIGATHSDK 71
            KHGRPGIGATHS +
Sbjct: 134 TKHGRPGIGATHSSR 148


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 48.0 bits (109), Expect = 9e-07
 Identities = 22/49 (44%), Positives = 33/49 (67%)
 Frame = -2

Query: 265 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHXLGE*XGTXK 119
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGE   T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 298 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 197
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 203 NADN*TDHLGNDDHVSQVSLHDLWLLIR 286
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 474 SRKSVFSGSSLTGELISISSLICPMSNSWN 385
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 510 NKQET-WLRST-KPSRKSVFSGSSLTGEL 430
           NKQET  L++T +P+ K +  GSS TG++
Sbjct: 39  NKQETAGLQTTSRPTAKQLVGGSSWTGKI 67


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 522 LLLSNKQETWLRSTKPSRKSVFSGSSLTGEL 430
           L +S K  TW R  +   KS  S SSL G++
Sbjct: 315 LEISTKSITWSRKARRISKSQTSVSSLEGQM 345


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 346 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 251
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -2

Query: 304 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 152
           A  E  P+  P+++ + L +  +     P + GS+  +Y    FN V++  +  G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,108
Number of Sequences: 5004
Number of extensions: 32519
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)