Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_H22
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   177   5e-45
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   175   2e-44
08_01_0397 - 3509186-3510291,3510322-3512335                           31   0.58 
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    27   7.1  
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188...    27   7.1  
02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131     27   9.4  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  177 bits (431), Expect = 5e-45
 Identities = 94/154 (61%), Positives = 107/154 (69%), Gaps = 21/154 (13%)
 Frame = -2

Query: 469 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRA---- 302
           KKR FRK++YRGVDLD LLDM  + L++L          RGLKRKPMAL+KKLR+A    
Sbjct: 252 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNF 311

Query: 301 -----------------KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVE 173
                            KK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVE
Sbjct: 312 EGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVE 371

Query: 172 IKPEMIGHXLGE*XGTXKPXKHGRPGIGATHSDK 71
           IKPEMIGH L E   + KP KHGRPGIGATHS +
Sbjct: 372 IKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSR 405


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  175 bits (425), Expect = 2e-44
 Identities = 84/121 (69%), Positives = 96/121 (79%)
 Frame = -2

Query: 469 KKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKKEA 290
           KKR FRK++YRGVDLD LLDM  + L++L          RGLKRKPMAL+KKLR+AKK+A
Sbjct: 124 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 183

Query: 289 PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHXLGE*XGTXKPXK 110
           P  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGH L E   + KP K
Sbjct: 184 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 243

Query: 109 H 107
           H
Sbjct: 244 H 244


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = -1

Query: 308 SRQERGSSE*EARDREDSLEK---HDHRSRD-GRFNCRHLQRKNF*PG*NQA*DDXXXXX 141
           S  E GSS+   RD+E   E+     HR RD  R + RH  R++     ++  D      
Sbjct: 3   SSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHR 62

Query: 140 XXXRHXQAXKARETRXR-CDTQRQGAXRDKESGENHREAKR 21
              R  +  KARE   R  + +R+ A R +E     R  +R
Sbjct: 63  EKERDREERKAREREEREKEKERERARRREERDREERSRRR 103


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 233 NDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT 340
           +DD+V+ VSL+ L  L    ++L    L  +CH+FT
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690


>05_04_0331 +
           20317482-20318174,20318518-20318685,20318773-20318895,
           20319094-20319165,20321217-20321431,20321521-20321593,
           20322092-20322568,20322970-20323077,20323184-20323192,
           20323193-20323552
          Length = 765

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 435 ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWS 319
           E+I I  L+C + S  WN  + + A  ++ +  VN+ HWS
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWS 364


>02_03_0398 - 18578969-18579140,18579351-18579539,18580032-18581131
          Length = 486

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 69  TLSLCVAPXPGLPCFXGLXVPXHSPRXWPI 158
           T SL   P P  P   G+ VP H  R + +
Sbjct: 94  TSSLAAGPRPTAPLMPGIMVPVHGQRLYAL 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,066
Number of Sequences: 37544
Number of extensions: 235277
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)